Rhodoferax ferrireducens: Rfer_3600
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Entry
Rfer_3600 CDS
T00334
Name
(GenBank) Uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rfer_3600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_3600
Enzymes [BR:
rfr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Rfer_3600
DNA repair and recombination proteins [BR:
rfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rfer_3600
Prokaryotic type
Rfer_3600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ABD71304
UniProt:
Q21SE9
LinkDB
All DBs
Position
complement(4011327..4012079)
Genome browser
AA seq
250 aa
AA seq
DB search
MFASDVPRLTGWAPERWPVAADWRPVVDRFLTSETGRALERFVRARLAGGAVIYPQQPLR
ALALTPLAQVKVVILGQDPYHGPGQAEGLAFSVAPGVRPPPSLCNIFREIARDPLLSPGN
LIPHGDGSLVAWARQGVLLLNSCLTVEEGQPASHAGRGWEALTDEVVKAVASIDNPVVFL
LWGAHAQAKQRLIAATARQGGRAAADHLVLTANHPSPLSARRPPLPFLGCGHFGLANAYL
LQHGCAPIAW
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccagtgacgtgccccgtttgaccgggtgggcgcctgagcgctggccggtggcg
gccgactggcggcctgtggtggaccggtttttgaccagtgagacgggtcgggccttggag
cgcttcgtgcgagcgcggctggccggtggcgccgtcatctacccgcagcagcccttgcgc
gcgctggcgctgacgccgctggcacaggtcaaagttgttattttgggccaggacccctat
cacgggcccggtcaggccgagggtctggcgttttcggtggcgcctggtgtcagaccgccg
ccttcactgtgcaatatattcagggaaattgcccgggaccccttgctgagcccaggcaac
ttgatcccacacggcgacggctcactggtcgcctgggcgcgccagggtgtcttgctgctc
aacagctgcctcaccgtcgaggagggccagcccgccagccatgccgggcggggctgggag
gcgttgaccgatgaggtggtcaaggcggttgcatcaatcgataatccggtggtgttcctg
ttgtggggtgcccacgcgcaggctaaacagcgtctgatcgcggcgactgccaggcagggc
ggtcgtgccgcggccgaccatctggtgctcacggccaaccacccatcgcccctgtccgcc
cgccgcccgcccttgccatttctgggttgcgggcattttggtctggcaaacgcttatctg
ctgcagcatggctgcgcgccgattgcctggtaa
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