Rhodoferax ferrireducens: Rfer_3775
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Entry
Rfer_3775 CDS
T00334
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr00061
Fatty acid biosynthesis
rfr00071
Fatty acid degradation
rfr01100
Metabolic pathways
rfr01212
Fatty acid metabolism
rfr02024
Quorum sensing
rfr04146
Peroxisome
Module
rfr_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Rfer_3775
00071 Fatty acid degradation
Rfer_3775
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Rfer_3775
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rfer_3775
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rfr01004
]
Rfer_3775
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rfr04147
]
Rfer_3775
Enzymes [BR:
rfr01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Rfer_3775
Lipid biosynthesis proteins [BR:
rfr01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Rfer_3775
Exosome [BR:
rfr04147
]
Exosomal proteins
Exosomal proteins of breast milk
Rfer_3775
Exosomal proteins of breast cancer cells
Rfer_3775
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Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
DUF4235
Motif
Other DBs
NCBI-ProteinID:
ABD71475
UniProt:
Q21RX8
LinkDB
All DBs
Position
complement(4217231..4218925)
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AA seq
564 aa
AA seq
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MDKIWLKNYPPGIAAEVDVHEFASLRDVLRRSCERFAELPAYSNMGASMTYAELDQHSRD
FAAYLQNTLGLNKGERVAVMMPNLLQYPVALFGVLRAGLVVVNVNPQYTVPELEHQLKDS
GAVAIVVLENFAHTLQEVLNRNPALKLNVLSTEVGDMFPVLKEVLTNVVVKYVKKMVPEW
HIDGVIEFNAALRAGRDLTLRHVPLGHDDIAFLQYTGGTTGVAKGAVLTHGNLTANLQQL
GAWIAHDLLDGRELFVCPLPLYHVFALSSSLVFMKIGAHSILITNPRDLPAFIHDLKKYP
FTAIVGVNTLYRALLDTPEFAEVDTRSLKVVIAGGMAVQRVVAERWKKATGKPIIEAYGL
TETSPGVTANPLNIVDWTGTIGMPFPSTEAAVLDDDGRELALGEVGEIGIRGPQVMTGYW
NRPDETAKVFTAEGWLRTGDMGFMDERGYFKITDRKKDMIIVSGFKVFPNQIEDAVALHP
GVAEVAAIGAPDERSGEVVKIIVVRSDPALTEQDLLAHCRQHLTDYKVPKIIEFRTEPLP
KTNLGKILRRQLRALPELPVPTPP
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatctggttaaagaattacccgcccgggatagcggctgaggtggatgtgcat
gagttcgcctcgctgcgggatgtgctgcggcgcagttgcgagcgctttgccgaactgccg
gcatacagcaacatgggtgcgtcaatgacctatgccgaactcgatcagcacagccgcgac
tttgccgcctacctgcaaaacacgctgggtctcaacaagggggagcgggtcgcggtcatg
atgcccaacctgttgcagtatccggtggcactgtttggcgtgctgcgcgccgggctggtg
gtggtgaacgtgaacccgcagtacaccgtgcccgaactggagcaccagctcaaggattcc
ggcgcggtcgccatcgtggtgctggaaaactttgcccataccttgcaggaagtgctgaac
aggaacccggcgctgaagctcaacgtcctgagcaccgaagttggcgacatgttcccggtc
ctcaaggaagtgctcaccaacgtggtggtcaagtatgtgaaaaaaatggtgcccgagtgg
catattgacggtgtcatcgaattcaatgccgccctgcgcgcgggccgtgacttgaccctg
cgccatgtgcccctgggccatgacgacatcgcttttctacagtacaccggcggcaccacc
ggcgtcgccaagggcgctgtgttgacacacggcaacctgacggcgaacctgcagcagctg
ggcgcatggattgcgcatgacctgctcgacggtcgggagctgttcgtctgtccgttgccg
ctgtaccacgtcttcgccctgagttcgagcctggtgttcatgaagatcggcgcgcacagc
atcctgatcaccaacccgcgggacctgcccgcgttcatccatgatctcaagaaataccct
ttcacggccatcgtcggcgtgaatacgctgtaccgggcgctgctcgatacgcctgaattt
gccgaggtggacacccgcagcctcaaggttgtcattgccggcggcatggcggtgcaacgt
gtggtggccgaacgctggaagaaggccacgggcaagcccatcattgaagcctacggtctg
acagaaacctcgcccggcgtgacggccaatccgctcaacatcgtcgactggacgggcacc
atcggcatgccatttccgtcgaccgaggccgccgtgctggacgacgacggacgcgagttg
gcgctcggcgaggtgggcgaaatcggcatccgcggcccgcaggtgatgacgggctactgg
aaccgccctgacgagaccgccaaggtgttcaccgcggagggctggctgcgcaccggcgac
atgggcttcatggacgagcgcggctacttcaagatcaccgaccgaaagaaggacatgatc
atcgtgtccggcttcaaggtgtttccgaaccagattgaggacgccgtggcgctgcatccg
ggcgtggccgaggtggcagccattggcgcgcccgacgagagatccggcgaggtggtcaag
atcattgtggtcaggagcgatccggccctgaccgagcaagacctgctggcccattgccgc
cagcacctgaccgactacaaggtgcccaagatcatcgagttccgcaccgagccgctgccc
aagaccaacctgggcaagattttgcggcggcagttgcgcgcactgcctgagttgccagtg
ccgacgcccccctga
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