Rhodoferax ferrireducens: Rfer_3777
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Entry
Rfer_3777 CDS
T00334
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03030
DNA replication
rfr03430
Mismatch repair
rfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rfer_3777
03430 Mismatch repair
Rfer_3777
03440 Homologous recombination
Rfer_3777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfr03032
]
Rfer_3777
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_3777
Enzymes [BR:
rfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rfer_3777
DNA replication proteins [BR:
rfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rfer_3777
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rfer_3777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
PAS_4
DEDDh_C
DNA_pol_A_exo1
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ABD71477
UniProt:
Q21RX6
LinkDB
All DBs
Position
complement(4220151..4222319)
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AA seq
722 aa
AA seq
DB search
MKINRRLLLATAAVGLGLALWLVLTLALVWSTLEPSQRESMGALLAPRLALLGMSWGVAL
LLVASLLRLLYRRYVSAPARLLEATRVLLTATEPQSLRPNGTTETRALALAINELAAQRD
HLRADMTQQVAQASLSVKQEKNRLAALMAELTQSVVVCNLDGRILLYNNRARLQLPQFSQ
ARGLADGAGSIGIGRSIYAVFDRQLVVHALENIHRRLVRGAASPSTQFVTTTPSGQLLRV
QMAPVRPGEIDASNVDAFTGFVLVLDNITRNFEQESLRDQLLHGLTEGSRSSLANMQAAL
DMLGYPDLEPAMHERFMGVLREELVAMSARITDLVQHSTLGLKTRWPLEEMLGTDLMTAA
QRQIGNYCQRPVTLDTLDESLWLKVESFTLLQALTYLASRLVEEFEVKFLRLRLQAVGER
AQLDLIWTGHAMSTETVMTWEMDAMRFGTESTPLTVRDVVERHGGEMWFERERIRHEAFF
RFLLPVASAQEQLEAMQVMQIESRPEYFDFDLFQVTEEGRALDERALSDLSYTVFDTETT
GLNPAEGDEIIQIGAARIVNKKILRQESFEQLVNPDRLISAASVQIHGITQDRVIGQPRI
GEVLPAFHAFAQDTVLVAHNAAFDMKFLQLKEAATGLAFHQPVLDTLLLSAVVHPNQESH
RLEAIAERFNITVLGRHTALGDAMVTAEVWLRLIPLLNAMGIYTLRQAREAAQKTYYARL
KY
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaatcgccgtctgctgctggcgactgccgccgtgggtttgggtctggctctt
tggttggttcttacgctggcgctggtttggtccacgctggagccgtcacagcgggaatcc
atgggcgcgttgctggccccccgcctggcgctgctgggcatgagctggggggtggcttta
ctgctggtggcatcactgctacgcctgctctatcgtcgctacgtcagtgctccggcgcgg
ctgttggaagcgacccgtgtgctgttgacggccactgagccgcagtccttgcgcccaaac
gggactaccgaaacccgggcgctggcgctagccatcaatgagttggcggcccagcgcgat
cacttgcgcgcggacatgacgcagcaggtggcgcaggccagtttgagtgtgaaacaggaa
aaaaatcgccttgccgccctgatggccgagctgacccaaagcgtggtggtgtgcaacctg
gatgggcgcatcctgctctacaacaaccgggcgcgactccagttgccacaattttcccag
gcccgtggtctggcggatggcgccgggtcaatcggcatcggccgttccatttacgctgtt
tttgatcgccagctggtggtccatgccttggaaaatatccaccgacgcctggtgcgcggc
gcggccagcccgtccacccagtttgtcaccaccaccccttcgggccagttgttgcgtgta
caaatggccccggtacgtccgggcgagatcgatgccagcaacgtggatgccttcactggc
tttgtgctggtgcttgataacattacgcgcaactttgagcaagagtcgctgcgtgatcaa
ctgctgcacggcctcaccgagggcagtcgctcctccctggccaacatgcaggcggcgctg
gatatgctgggttatcccgatctggagcccgccatgcacgaacgttttatgggcgtgctg
cgtgaagagctggtggccatgagcgcgcgcattaccgacttggtgcagcattccacgctg
ggtctcaagacccgctggccgttggaagaaatgctgggcactgatctgatgaccgcagcg
cagcggcagattggaaattattgccaacgcccggtaactttggacactctggacgagagc
ctgtggctcaaggtggagagcttcacgctgctgcaggcgctgacctacctggcgagccga
ttggtcgaagaattcgaggtcaagttcctgcgactgcggctgcaggctgtgggcgagcgc
gcccagctggacctgatctggactggccatgccatgagtaccgagacggtgatgacctgg
gagatggatgccatgcgttttggcaccgaaagcacgccgttgacggtgcgcgatgtggtg
gagcgccatggcggcgagatgtggtttgagcgcgagcgtattcgccacgaagctttcttc
cgtttcctgctgcccgtggccagtgcacaggagcagttggaggcgatgcaggtgatgcaa
atcgagagtcgacccgagtacttcgacttcgacctgtttcaggtgactgaggagggccgc
gcgctcgatgaacgggcactgtcggatttgtcgtatacggtgttcgacaccgaaaccacc
ggcctcaatccggccgagggcgacgaaatcatccagattggtgcggcccgcatcgtcaac
aaaaaaatactgcgccaggagagttttgagcagttggtgaacccggaccggctgatctcc
gccgcctccgttcagattcacggcattacgcaggaccgggtgataggccagccgcgcatt
ggtgaggtgctgccggcctttcacgcctttgcccaggatacggtgctggtggctcacaat
gcggccttcgacatgaagtttttgcagctcaaggaagccgcgaccgggctggcttttcac
cagccggtgctcgacaccctgttgctgtcggcggtggtgcaccccaatcaggagtcgcac
cgcctggaggccatcgccgagcgtttcaacatcacggtattgggtcggcacactgcttta
ggcgatgccatggtgaccgccgaggtgtggttgcgcttgatccccctgctcaatgccatg
ggcatctacaccctgcgccaggcgcgcgaggcagcgcaaaaaacctattacgcgcgtctc
aagtattga
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