Rhodoferax ferrireducens: Rfer_3920
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Entry
Rfer_3920 CDS
T00334
Name
(GenBank) peptidoglycan glycosyltransferase
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr00550
Peptidoglycan biosynthesis
rfr01100
Metabolic pathways
rfr01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Rfer_3920
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Rfer_3920
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rfr01011
]
Rfer_3920
Enzymes [BR:
rfr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Rfer_3920
Peptidoglycan biosynthesis and degradation proteins [BR:
rfr01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
Rfer_3920
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
gpW
Motif
Other DBs
NCBI-ProteinID:
ABD71619
UniProt:
Q21RI4
LinkDB
All DBs
Position
complement(4378252..4380273)
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AA seq
673 aa
AA seq
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MTELRNVEADLSRFRARVLVAGIAVVVCFLLVLSRLVYLQVVRHDDLLEQAESNRTAIVP
VVPNRGLILDRNGIVLASNYSAYTLEVTPSKVTDLEQTIDALSQVVEISQRDRRRFKKLR
EESKSFESLPLRTRLSDEEVAKFAGQHYRFPGVEIKARLFRSYPYGELASHVIGYIGRIN
QTEKEKLDDSDDAANYRGTDYIGKLGVEQSFEAQLHGITGVDSMETSAGGRAMRRLASNP
ATPGNTVKLALDIKLQHMVEELFGERRGALVALDPKTGEILAFVSKPTFDPNLFVEGIDQ
ESWQALNESIDKPLLNRALRGTYPPGSTYKPFMALAALETGKRTPEQTIFDPGYFMFGGH
RFRDDKEGGHGNVDMYHSIVASCDTYYYMLANDLGVDTIHDQLQRFGFGELTGIDIFGEV
RGLLPSTAWKRKAYKKPEQQKWYAGETISLGIGQGYNNFTMLQLASAVGTLANNGVKMKP
HLVKEVMDIITHAPTTTEHESVGEVIAKAANIAVIKHAMVGVNLEGTSSASFRGAPYTSG
GKTGTAQVVQIKANEKYVASKMEERFRDHALFTAFAPAEDPKIALAIIVENAGFGAKYSA
PIARRVIDYWLLNQYPSLEDIEAVKKGMAPAPIGKPRTVAELPWPPGAPVAPVAPASAAS
APAKTASAASPGR
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaactgcgcaacgtcgaggcggatctgtcgcgctttcgggcgcgggtgctggtg
gccggcatcgcggtcgtggtgtgctttttgctggtgctgtcgcggctggtgtacctgcag
gtggtgcgccacgacgacctgctggagcaggccgaaagcaaccgcaccgcgattgtgccg
gtggtgccgaaccggggcctgatcctcgaccgcaacggcattgtgctggccagcaactac
tcggcctacacgctggaagtgaccccctccaaagtgaccgatctggagcagacgatcgac
gccctgtcgcaggtggtcgagatatcgcagcgtgaccggcgtcgtttcaagaagctgcgt
gaagagtccaagagttttgagtcgctgccgctgcgcacccgcctgagtgatgaagaggtc
gccaaatttgcggggcagcactatcgttttccgggtgtcgagatcaaggcccggctgttt
cgcagctacccctatggcgagctggccagccacgtcatcggctacatcgggcgcatcaac
cagaccgaaaaggaaaagctcgacgactccgacgatgccgccaactaccggggtaccgat
tacatcggcaagctcggtgtggagcagagctttgaggcccagttgcacggcatcaccggt
gtcgactcgatggagacctcggccggcgggcgcgccatgcgccgactcgccagcaacccg
gccacccctggcaacaccgtcaagctggcgcttgacatcaagctgcaacacatggtggaa
gagctgtttggcgaacgccgcggcgcgctggtggcgctggaccccaagaccggtgaaata
ctggcctttgtcagcaagcccacttttgacccgaatctgtttgtcgaaggcattgaccag
gaaagctggcaagcgctcaacgagtccatcgacaagccgttgctgaaccgcgcgttgcgc
ggcacctacccgcccggttccacctacaagcccttcatggcgttggcagcgctggagacc
ggcaaacgcacgcccgagcagaccatcttcgaccccggctacttcatgtttggcgggcat
cgctttcgcgacgacaaagagggtggccacggcaatgtcgacatgtaccactcgatcgtg
gcgtcgtgcgacacctattactacatgctggctaacgacctgggggtggacaccatccac
gaccagttgcagcgcttcggttttggtgagttgaccggcattgacattttcggcgaggtg
cgcggcctgctgccatccacggcctggaagcgcaaagcctacaaaaagccggaacagcaa
aagtggtacgccggtgaaaccatctcgctgggcatcggccagggctacaacaacttcacc
atgctgcaattggcctcggcggtcggcacgctggccaacaatggtgtcaagatgaagccg
cacctggtgaaagaggtgatggacatcatcacgcacgcgccgaccaccaccgagcacgaa
tcggtgggtgaagtgatcgccaaagcggccaacattgcggtcatcaagcacgccatggtc
ggggtgaacctggagggcacctcatcggccagcttccgcggcgcgccctacaccagcggc
ggcaagaccggcacggcgcaggtggtgcagatcaaggccaacgaaaagtacgtcgcctcc
aagatggaggagcgctttcgcgaccacgccctgttcaccgccttcgcgccggctgaagac
cccaaaattgccctggccatcatcgtggaaaacgccggatttggcgccaaatactcggcc
ccgattgcgcgccgggtgattgattactggctgctcaaccagtacccgagcctggaagac
attgaggcggtgaaaaaaggcatggcaccggcaccgattggcaaaccgcgcacggtggca
gagctgccctggccgccgggtgcaccggtggcgcctgtggcaccggctagcgccgccagc
gcgccggcaaaaacggcgagtgcggcatcacctggccgttaa
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