KEGG   Rhodoferax ferrireducens: Rfer_4010
Entry
Rfer_4010         CDS       T00334                                 
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
rfr  Rhodoferax ferrireducens
Brite
KEGG Orthology (KO) [BR:rfr00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rfr02048]
    Rfer_4010
Enzymes [BR:rfr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Rfer_4010
Prokaryotic defense system [BR:rfr02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Rfer_4010
SSDB
Motif
Pfam: T1RH-like_C SWI2_SNF2 HSDR_N T1R_D3-like ResIII HSDR_N_2 Glyco_hydro_44
Other DBs
NCBI-ProteinID: ABD71708
UniProt: Q21R95
LinkDB
Position
4473039..4476242
AA seq 1067 aa
MLTESAIETFAIKLFERLGYVYLHGPDIAPDSDGPERSSYAEVLLPGRLAQAAGRINHKL
PRDVVEMALKEVQRAHSPDLLASNEAFHRLLTEGVPVSMQKDGDTRGERVWLIDFARPEN
NEFVVANQFTVIENHQKKRPDLVLFVNGIPLVVIELKNAADENATLKSAYQQIETYKQAI
PSLFTANALVVISDGLEAKAGSISASLSRFMAWKSADGKAEASHLVSQLEALILGMLNQG
TLLDLVRHFIVFEKGSKEDPNTGQITISTIKKLAAYHQYYAVNAAVASTLRAADMGGPLS
VRENPASYGLPGIADQPKSDMKAGVVWHTQGSGKSLSMVFYTGKIVLTLDNPTVLVITDR
NDLDDQLFNTFAASKQLLRQEPVQAKDREHLKALLKVAAGGVVFSTIQKFQPDEGNVYDQ
LSNRPNIVVIVDEAHRTQYGFAAKTVDEKNADGMVIGKKVVYGFAKYLRDALPRATYLGF
TGTPIEKTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLAKVSLSEEGKKLIAELD
EELEQDELTETQKPKAKWTKMEALIGSEQRVKNIARDIVGHFEARQEVFAGKGMVVSMSR
RIAADLYDEIIKLRPDWHADELSKGVIKVVMTAASSDGPKLAKHHTTKEQRKLLAERMKA
EDDPLKLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKDKPGGLVVDYL
GIAADLKEALSFYSDAGGKGDPTLLQEQAVGLMLEKLEVISALYHGFAYEHYFGANTAQK
LSLILAAEEHILGLDDGRKRYINEVTALSQAFAIAIPHEQAMDVKDEVGFFQAVKARLVK
YDSVEGERSNEEIETTIRQVIDQALVSEKVIDVFDAAGIKKTDISILSDEFLAELKGYEH
KNVALEVLKKLLNDELKIRAKRNLVQSRSLMEMLEASIKKYHNKILTAAEVMDELIKVSK
EIVAADDEARHMGLSDFEYAFYTAVANNDSARELMQQDKLRELAVVLTQRVRENASIDWT
IKENVRAKLKVIVKRTLRQFGYPPNMELLATETVLKQAEMIANELTQ
NT seq 3204 nt   +upstreamnt  +downstreamnt
atgctcaccgaatccgccatcgaaacctttgccatcaagctgtttgaacggctaggttac
gtctacctgcatggccctgacatcgcccctgacagtgatggcccagagcgcagcagctac
gccgaggtgctgttgcccggtcggctagcccaggccgccgggcgcatcaaccacaagctg
ccccgggatgtggttgaaatggcgctcaaggaggtgcaacgggcccactcgccagacttg
ctggccagcaatgaggctttccatcgcctgttgacggaaggggtgccggtcagcatgcaa
aaggatggtgacacacgcggcgaacgggtgtggctgattgacttcgcccggcctgagaac
aacgagttcgtggtggcaaaccaattcaccgtcatcgaaaaccatcaaaagaaacggccc
gacctggtgctgtttgtcaatggcattccgctggtggtgatcgaactcaagaacgcagcc
gatgaaaacgccacgcttaagtcggcgtatcagcagattgagacctacaaacaagccata
ccgagtctgttcactgccaacgctttggtcgtcatctctgacggcctggaggccaaggct
ggctccatctcagcaagtttgtcgcgctttatggcatggaagagcgctgatggcaaagca
gaagcgtctcatctggtcagccagttggaagcgctgatcctcggcatgttgaaccaggga
acgttgctggacttggtgcgccacttcatcgttttcgagaagggcagcaaggaagatccg
aacacaggtcagatcacgatcagcaccatcaagaagctggcggcctatcaccagtattac
gcggtgaacgcggcggtagcctccaccttgcgggcggcggacatgggcgggccgctgtcc
gtgcgcgagaatccggccagttatggcctgcccggtattgcagatcagcctaagagtgac
atgaaggcgggtgtggtgtggcacacccaggggtcgggcaagtcgctctccatggttttc
tataccggcaagattgttctaacgctggacaacccgacggtgctggtgatcaccgaccgc
aatgatctggacgaccagctttttaatacctttgccgcttccaaacagttgttacgccag
gagccagtgcaggcgaaggatcgcgagcacttaaaggcactgctgaaggtggcagcgggc
ggcgttgttttctcaaccattcagaagttccagcccgatgagggcaatgtttacgaccag
ctctccaatcgtcccaacatcgtggtgatcgtcgacgaagcccaccgcacccagtacggc
tttgccgccaagacggtagacgagaaaaatgcagatggcatggtgatcggcaagaaggtg
gtctatggctttgccaagtatctgcgcgatgctttgccccgcgccacctatctgggtttc
accggtacacccattgagaaaactgatgtgaacaccccggcggtgtttggcaactatgtg
gacatctatgacattgcccaagcagtggaggatggtgccacggtgcgtatttattacgag
agccgcctggccaaagtaagtctgagcgaggaaggcaagaaactgattgccgaattggac
gaagagctggagcaagacgagctgaccgagacacaaaaacccaaagccaagtggaccaag
atggaggcgctgattggcagtgagcagcgagttaagaacattgcccgcgacatcgtcggt
cactttgaggcgagacaggaggtattcgctggcaagggaatggtggtgagcatgtcgcgg
cgcattgctgccgatctgtatgacgaaatcatcaaactgcggcccgactggcacgccgac
gaactgagcaaaggcgttatcaaggtggtgatgactgctgcatcaagcgatgggccgaag
ctcgccaagcaccacactaccaaggagcagcggaagctgctggccgagcgcatgaaggct
gaagatgatccgctcaagttggtgatcgtgcgcgacatgtggctgaccggcttcgatgcg
ccgagcatgcacaccctctacatcgacaagcccatgaaggggcacaacctgatgcaggct
attgcgcgggtgaaccgtgtgtacaaagacaagcctggcggcttggtggtcgattacctg
ggaatcgcggcggacctcaaagaggcgctttcgttctattccgatgctggcggcaagggt
gacccaaccctgttgcaggagcaggccgtgggcctgatgctggagaaacttgaggtgatc
tcggccctgtatcacggctttgcctatgaacactatttcggagcgaataccgcccagaag
ctgtcgctgattctcgcggcggaagagcatatcctcggcttggatgacggccgcaagcgt
tatatcaacgaggtcacggcgctttcgcaagccttcgccattgccataccgcatgaacaa
gcgatggacgtgaaagacgaggtgggcttcttccaggccgtgaaggcgcggctggtgaag
tacgacagtgtcgaaggcgagcgcagcaacgaagaaattgaaaccaccattcgccaggtg
attgaccaagcgttggtgtcggaaaaagtgattgatgtgtttgacgcggcgggcatcaaa
aaaacagatatctccatactgtcggatgaattcttggccgaactgaaaggctacgagcat
aaaaacgtggccttggaggtgctcaagaaactcctcaatgacgaattgaaaatccgcgcc
aagcgcaacctggtgcaaagccggtcactgatggagatgttagaggcctccatcaagaaa
taccacaacaagattctgactgcggccgaggtgatggacgagctgatcaaggtcagcaaa
gagatcgtcgccgccgatgatgaagccagacacatggggctttccgactttgaatatgct
ttttacactgcagtggccaataacgacagtgcccgtgaactgatgcaacaagacaagtta
cgcgaactagccgtggtgttaacccagcgcgtgcgcgaaaacgcatccatagactggact
atcaaagagaacgtgagagctaagctcaaggtgattgtgaaacgcactctgcggcaattt
ggttatccaccaaacatggagttgctcgcgactgaaacagtgctgaagcaggcggagatg
attgcgaacgagcttacgcagtag

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