Rhodoferax ferrireducens: Rfer_4067
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Entry
Rfer_4067 CDS
T00334
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr00061
Fatty acid biosynthesis
rfr00071
Fatty acid degradation
rfr01100
Metabolic pathways
rfr01212
Fatty acid metabolism
rfr02024
Quorum sensing
rfr04146
Peroxisome
Module
rfr_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Rfer_4067
00071 Fatty acid degradation
Rfer_4067
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Rfer_4067
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rfer_4067
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rfr01004
]
Rfer_4067
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rfr04147
]
Rfer_4067
Enzymes [BR:
rfr01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Rfer_4067
Lipid biosynthesis proteins [BR:
rfr01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Rfer_4067
Exosome [BR:
rfr04147
]
Exosomal proteins
Exosomal proteins of breast milk
Rfer_4067
Exosomal proteins of breast cancer cells
Rfer_4067
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Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
CHASE8
LamB_YcsF
Motif
Other DBs
NCBI-ProteinID:
ABD71765
UniProt:
Q21R38
LinkDB
All DBs
Position
4534527..4536338
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AA seq
603 aa
AA seq
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MNHPTALPELTLAQMLRERARAAPARLGIRQKDFGIWKPVSWGSYYLRACHFGLGLRALG
LPEGGHVGVIAENRIEWVLAQMGVSLVGAVAVGVYSTSPTSEVAYVVAHADIEIMVCEDQ
EQAEKVLAALEQLPRLRKIVVMETKGLRSFAPEARQLIATFDEVEQLGAASGNLALIDEV
LAHQTLDDIGLMIYTSGSTGKPKGAMISYRNIRGVVPGIVERLRLTAETSHLSYLPLCHV
AEQMLTTFAPIYIGSQVNFGESIRTVQEDLREVAPTMFLGVPRIWEKMHATISIKLQETG
RLRRVLFRQAYAACQGLAEKPRAAWSIKEKLVFGLSYWTFFRALQNFIGLRKAQVALTGA
APIPPDVVRFFRVLGVPLVEVYGLTESTGMVTGHPIDQVIVGTVGTPTLGVEHRIGENGE
LLLRGDMVFAGYYKNPEATATSIRDGWLYTGDVVREEGGQLKIVDRLKDIMITAGGKNLT
PSEIENTMKGSPFIKECIIVAEGRKFVGALVQIDFEVMSQWAEARRIAFTHFRSLVERPE
VRALIDAEIAQGNTRLAQVSHIRKFHLLTKELDHDDGEVTATMKVRRSSIYKTYAAEIEA
LYH
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaccccaccgcactccctgaactgaccctggcgcagatgctgcgcgagcgtgcg
cgcgcggcccccgcgcgtctcggcatccggcaaaaggactttggcatctggaagccggtc
agctggggcagctactacctgcgcgcctgccacttcggtctgggcctgcgcgccctgggc
ttgccagagggcggccatgtcggcgtgatcgccgaaaaccgcatcgaatgggtgctggcg
cagatgggcgtcagcctggtcggcgccgtcgccgtgggcgtctactccaccagcccgacg
tccgaggtggcctacgtggtggcccacgctgacatcgagatcatggtctgcgaagaccag
gagcaggccgagaaggtgttggccgcgcttgagcagttgccgcggctgcgcaagatcgtg
gtcatggaaaccaagggcctgcgcagcttcgcccctgaagcgcgtcaactgatcgccacc
tttgacgaggtggaacaactcggcgccgcgagcggcaatcttgccctgatcgacgaggta
ttggcgcaccagacgctggacgacattggactcatgatctacacctcgggctcgaccggc
aagcccaagggcgcgatgatttcctaccgcaacatccgcggcgtggtgcccggcatcgtg
gagcgcttgcgcctcacggccgagaccagccacctgtcctacctgccgctgtgccatgtg
gcggagcagatgctgaccacctttgcgccgatctacatcggctcgcaggtcaactttggc
gaatcgatccgcaccgtgcaggaagacctgcgcgaggtcgcgcccaccatgttcctgggc
gtgccccgcatctgggaaaaaatgcacgccaccatcagcatcaagctgcaggaaaccggc
cgcttgcgccgcgtgctgttcagacaagcctacgcggcctgccagggcctggccgaaaaa
ccgcgtgccgcctggagcatcaaagaaaagctggtgtttgggctgagttactggactttc
tttcgcgccctgcagaacttcatcggcctgcgcaaggcgcaagtggcgctcacgggcgcg
gcaccgatcccgcccgacgtggtgcgtttctttcgcgtgctgggcgtgccgctggtcgag
gtctatgggctgaccgagtccaccggcatggtcacgggccacccgattgaccaagtgatc
gtcggcaccgtgggcacgcccacgctgggcgtggagcaccgcatcggcgagaacggcgaa
ctgctgctgcgcggcgacatggtgtttgccggctactacaagaaccctgaggccacggcg
accagcatccgcgacggctggctctacaccggcgacgtggtgcgcgaggagggcggccag
ctcaagatcgtcgaccgcctgaaagacatcatgatcaccgccggtggcaagaacctgacg
ccctcggaaatcgaaaacaccatgaagggcagcccttttatcaaggaatgcatcatcgtg
gccgaggggcgcaagttcgtcggcgcgctggtgcagatcgactttgaagtcatgagccag
tgggccgaagcacgccgcatcgcgttcacccacttccgctcgctcgtggaacggcccgag
gtgcgcgcgctgatcgacgccgaaatcgcgcagggcaacacccgactggcgcaggtctcg
cacatccgcaagttccacctgctgaccaaggaactggaccacgacgacggtgaagtgacc
gccaccatgaaggtgcgccgctccagcatctacaagacctacgcggcagaaatcgaagcc
ctgtaccactga
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