Rathayibacter festucae: C1I64_00670
Help
Entry
C1I64_00670 CDS
T06173
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rfs
Rathayibacter festucae
Pathway
rfs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rfs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1I64_00670 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfs03021
]
C1I64_00670 (rpoB)
03400 DNA repair and recombination proteins [BR:
rfs03400
]
C1I64_00670 (rpoB)
Enzymes [BR:
rfs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1I64_00670 (rpoB)
Transcription machinery [BR:
rfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1I64_00670 (rpoB)
DNA repair and recombination proteins [BR:
rfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1I64_00670 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF8659
Motif
Other DBs
NCBI-ProteinID:
AZZ50712
UniProt:
A0A3Q9UWW6
LinkDB
All DBs
Position
138130..141621
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAAPNATTTSPKNGRGASRLSFAKISDTLTVPDLLALQTESFDWLVGSEAWKTRVAEAK
AVGREDLPANSGLDDIFEEISPIEDLSETMQLSFTNPYLEPEKYTIEECKERGKTYAAPL
YVEAEFMNHLTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERQQEK
TSDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILEQFA
GYESIELTLEKDNILTKEDALRDIYRKLRPGEQVAAEAARALLDNFYFNSKRYDLAKVGR
YKINRKLGIDKALSDSVLTVEDIIATIKYLVALHDGRTNLPGVRDGAAVDLRLDVDDIDH
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRKVVDGVVTAQIDYLTASEEDEYLVAQANAPLTSDM
RFAEGKVLVRPKGGEVELVDAERVHYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLLRSESPVVGTGMEGFAAIDAGDVITADKAGVVQEVSADSVTVQLDEGGTQTYFL
RKFDRSNQGTSYNNRVVVSAGERIEVGEIVADGPATENGELALGKNLLVAFMPWEGHNFE
DAIILSQNLVKDDVLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTIIGVKV
FDAQDGDDELGSGVNQRVVVYIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLADGT
PVDIVLNPLGVPGRMNFGQVLEIHLGWIAKQGWKVDGKPEWAKRLPEHAREAAPGTKVAT
PVFDGAAEEELAGLLDSTTPTRDGERLIGSSGKTQLFDGRSGEPFPDPVSVGYMYILKLH
HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSD
DILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVSLRDTDDEV
YRAAEELGINISSRFESSSVDDI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcccaacgcaaccaccacctcacccaagaacggacgcggagcttcgcgt
ctctcgttcgccaagatcagcgacaccctgacggttccggatctgctcgcgctgcagacc
gagagcttcgactggctcgtcggctcggaggcgtggaagacccgcgtcgctgaggcgaag
gccgtcggccgggaggatctccccgccaactccggactcgacgatatcttcgaggagatc
tccccgatcgaggacctcagcgagacgatgcagctgagcttcacgaacccgtacctcgag
cccgagaagtacacgatcgaggagtgcaaggagcgcggcaagacctacgccgctccgctg
tacgtcgaggccgagttcatgaaccacctcacgggtgagatcaagacccagacggtcttc
atgggcgacttccccctgatgaccgagaagggcacgttcatcatcaacggcaccgagcgt
gtcgtcgtgtcccagctcgtccgcagcccgggcgtgtacttcgagcgccagcaggagaag
acgtccgacaaggacatctactccgcccgcgtcatccccagccgcggtgcctggctcgag
ttcgagatcgacaagcgcgaccaggtcggcgtccgcatcgaccgcaagcgcaagcagtcg
gtcaccgtcttcctcaaggccctgggcctgacgagcgaggagatcctcgagcagttcgcc
ggctacgagtcgatcgagctgaccctcgagaaggacaacatcctcaccaaggaggacgcc
ctccgcgacatctaccgcaagctccgcccgggcgagcaggtcgccgccgaggccgcccgc
gcgctgctggacaacttctacttcaacagcaagcgctacgacctcgccaaggtcggccgc
tacaagatcaaccgcaagctcggcatcgacaaggcgctgtccgactcggtgctcacggtc
gaggacatcatcgcgaccatcaagtacctggtcgcgctgcacgacggccgcaccaacctg
cccggtgtgcgcgacggtgccgcggtcgacctccgcctcgacgtggacgacatcgaccac
ttcggcaaccgccgcatccgcgcggtcggcgagctcatccagaaccaggtccgcaccggc
ctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgaggcgatc
accccgcagaccctgatcaacgtccgccccgtggtggccgcgatcaaggagttcttcggc
acctcgcagctgtcgcagttcatggaccagaacaacccgctcgcgggtctgacccacaag
cgccgcctgtcggcgctcggccccggcggtctctcccgtgagcgcgccggcgtcgaggtc
cgcgacgtccacccgtcgcactacggccgcatgtgcccgatcgagaccccggaaggcccg
aacatcggcctgatcggctcgctcgcgtccttcgcgcgcatcaactcgttcggcttcatc
gagacgccgtaccgcaaggtcgtcgacggcgtcgtcaccgcgcagatcgactacctcacc
gcgtccgaggaggacgagtacctggtcgcccaggcgaacgcccccctcacctccgacatg
cgcttcgccgagggcaaggtcctggtccgccccaagggcggagaggtcgagctcgtcgac
gccgagcgcgtgcactacatggacgtctccccgcgccagatggtgtcggtcgcgacctcg
ctgatcccgttcctcgagcacgacgacgcgaaccgcgcgctcatgggcgcgaacatgcag
cgtcaggccgtcccgctgctgcgcagcgagtcgcccgtcgtcggaaccggcatggagggc
ttcgcggccatcgacgccggcgacgtcatcacggccgacaaggccggcgtggtccaggag
gtctccgccgactccgtcaccgtccagctggacgagggcggcacgcagacctacttcctg
cgcaagttcgaccgctcgaaccagggcacctcgtacaacaaccgcgtggtcgtctccgcc
ggtgagcgcatcgaggtcggcgagatcgtcgccgacggtcccgcgaccgagaacggcgag
ctcgcgctcggcaagaacctgctcgtcgcgttcatgccgtgggagggtcacaacttcgag
gacgcgatcatcctcagccagaacctggtgaaggacgacgtcctctcctcgatccacatc
gaggagtacgaggtcgacgcccgcgacaccaagctcggcaaggaggagatcacccgcgac
ctccccaacgtcagcccggagctcctggccgacctggacgagcgcggcatcatccgcatc
ggcgccgaggtccgccccggcgacatcctcgtcggcaaggtcacgcccaagggcgagacc
gagctctcggccgaggagcgcctgctccgcgcgatcttcaacgagaagagccgcgaggtc
cgcgacacgtcgctcaaggtgccccacggcgagcagggcacgatcatcggcgtcaaggtg
ttcgacgcgcaggacggcgacgacgagctcggctcgggcgtcaaccagcgcgtggtcgtc
tacatcgcccagaagcgcaagatcaccgagggcgacaagctcgccggccgccacggcaac
aagggcgtcatctcgaagatcctgccggtcgaggacatgccgttcctcgccgacggcacc
ccggtcgacatcgtgctgaacccgctcggcgtccccggccggatgaacttcggccaggtc
ctcgagatccacctcggctggatcgcgaagcagggctggaaggtcgacggcaagcccgag
tgggccaagcgcctgcccgagcacgcccgcgaggccgctcccggcaccaaggtcgccacc
ccggtgttcgacggtgcggcggaggaggagctcgcagggctcctcgactccaccaccccg
acccgcgacggcgagcgcctgatcggctcgtccggcaagacgcagctgttcgacggccgc
tcgggggagcccttcccggacccggtctcggtcggctacatgtacatcctgaagctgcac
cacctcgtcgacgacaagatccacgcgcgctcgacgggcccgtactcgatgatcacccag
cagccgctcggtggtaaggcgcagttcggcggccagcgcttcggcgagatggaggtgtgg
gccctcgaggcctacggtgccgcctacgcgctgcaggagctcctcaccatcaagtcggac
gacatcctcggccgcgtgaaggtgtacgaggccatcgtcaagggtgagaacatccaggag
ccgggcatcccggagtccttcaaggtcctcatcaaggagatgcagtccctgtgcctgaac
gtcgaggtcctctcggccgacggcaccgcggtcagcctgcgcgacacggatgacgaggtc
taccgcgccgcggaggagctcggcatcaacatctcctcccggttcgagtcgtcctccgtc
gacgacatctga
DBGET
integrated database retrieval system
