Rathayibacter festucae: C1I64_08555
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Entry
C1I64_08555 CDS
T06173
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rfs
Rathayibacter festucae
Pathway
rfs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C1I64_08555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfs03400
]
C1I64_08555
Enzymes [BR:
rfs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C1I64_08555
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C1I64_08555
DNA repair and recombination proteins [BR:
rfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C1I64_08555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Zn_ribbon_TFIIB
zf-FPG_IleRS
Cys_rich_KTR
Prok-RING_1
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AZZ52103
UniProt:
A0A3Q9UR26
LinkDB
All DBs
Position
complement(1825634..1826494)
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AA seq
286 aa
AA seq
DB search
MPELPEVHALARDLDERLGGRVLERLDVFAISALKTVAISPSSLAGETVHGVSRHGKFLD
LAIGDVHVLLHLARAGWVRWRPERPTAPVKPGRGPLAARLILDDGSGFDITEAGTKKSLA
ISIVADPRDVPGVERLGPDPLDPEFTREILGAILATAGRAQLKGVLRDQSRIAGIGNAYS
DEILHVAKMSPFKPATLTPEELDRLYTALHYTLEEALARAEGLHAADLKREKKLGMRVHG
RTGEACPVCGDTIRQVIYSDSTLQYCPTCQTGGKPLADRVLSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactccccgaagtgcacgcgctcgcccgcgacctcgacgagcgcctcggcggc
cgcgtgctggagcgcctcgacgtgttcgcgatctccgcgctgaagaccgtcgcgatctcg
ccgtcctcgctcgcgggggagacggtgcacggggtgagccggcacggcaagttcctcgat
ctcgcgatcggcgacgtgcacgtgctgctgcacctggcccgcgcgggctgggtgcgctgg
cgccccgagcggccgaccgcgccggtgaagccgggccgtggcccgctcgccgcgcgactg
atcctcgacgacggctccggcttcgacatcaccgaggccggcacgaagaagagcctggcg
atctcgatcgtggcggatccgcgggacgtgccgggtgtcgagcggctcgggccggacccg
ctcgacccggagttcacccgcgagatcctcggcgcgatcctggcgaccgccggccgcgcc
cagctcaagggcgtgctgcgcgaccagtcgcggatcgccgggatcggcaacgcctactcc
gacgagatcctgcacgtcgcgaagatgtcgccgttcaagccggccacgctcacgccggag
gagctcgaccgcctctacaccgcgctgcactacaccctcgaggaggcgctcgcccgggcc
gagggcctgcacgccgccgatctcaagcgcgagaagaagctcgggatgcgcgtgcacggc
cgcaccggcgaggcctgcccggtctgcggcgacacgatccgccaggtgatctactccgac
tcgacgctgcagtactgcccgacctgccagaccggcggcaagccgctggccgaccgcgtc
ctctcgcgcctgctcaagtag
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