Rathayibacter festucae: C1I64_09785
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Entry
C1I64_09785 CDS
T06173
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rfs
Rathayibacter festucae
Pathway
rfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1I64_09785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfs03019
]
C1I64_09785
Messenger RNA biogenesis [BR:
rfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1I64_09785
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AZZ52308
UniProt:
A0A3T0T138
LinkDB
All DBs
Position
complement(2082632..2084308)
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AA seq
558 aa
AA seq
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MPSPVITPAALEAGTLRIIPLGGLGEIGRNMTVFEIDGKILVVDCGVLFPEENQPGVDLI
LPDFTPIKDRLDDIVGVVLTHGHEDHIGAVPYLLKLKPDIPLIGSTLTLALVEAKLKEHR
IKPYTLAVKEGDVENLGPFELEFVAVNHSIPDALAVAIITDAGSVLHTGDFKMDQLPLDG
RITDLRAFARLGEEGIDLFMVDSTNADVPGFTPNERDIGPVIESVMAKATRRVIVASFSS
HVHRVQQVLDAAHANGRRVALLGRSMVRNMGIAATLGYLKVPEGVLIDVKKAGDIPEDEI
VYMSTGSQGEPMAVLSRMANLDHQIQPGEGDTVILASSLIPGNENAVYRVINGLTRLGAT
VVHKGNAKVHVSGHAAAGELIYCYNILKPLNVLPVHGEYRHLVANAKLAQATGIAEENTI
IAEDGTVLDLRDGVVTVAGQLDLGFVYVDGSSVGEITDADLKDRRILSEEGFISIIVVVE
AGTGRIVVGPEIHAKGFAEDDSVFDDVKPRIAKALEEAVQSGVSDQHALSQSIRRVVGRW
VNTTYRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccagtcccgtgatcactcctgccgcgctcgaggcgggcactctgcgcatcatcccg
ctcggcggcctcggcgagatcggccgcaacatgacggtcttcgagatcgacggcaagatc
ctcgtggtcgactgcggcgtgctcttcccggaggagaaccagccgggggtggacctgatc
ctccccgacttcaccccgatcaaggaccgcctcgacgacatcgtcggcgtcgtgctgacc
cacggccacgaggaccacatcggcgccgtcccctacctcctcaagctcaagccggacatc
ccgctgatcggctcgaccctgacgctcgcgctggtcgaggcgaagctgaaggagcaccgg
atcaagccgtacacgctcgcggtgaaggagggcgacgtcgagaacctcgggcccttcgag
ctcgagttcgtggccgtcaaccactccatcccggacgctctcgccgtcgcgatcatcacc
gacgcgggctcggtgctgcacacgggcgacttcaagatggaccagctcccgctcgacggg
cgcatcaccgatctccgcgccttcgcccgcctcggcgaggagggcatcgacctcttcatg
gtcgactcgaccaacgcggacgtgcccggcttcacgccgaacgagcgcgacatcggcccg
gtcatcgagagcgtgatggcgaaggcgacccgccgggtgatcgtggcgagcttctccagc
cacgtgcaccgggtgcagcaggtgctcgacgccgcgcacgccaacggccgccgcgtggcg
ctgctcggccgctcgatggtccgtaacatgggcatcgccgccaccctggggtacctgaag
gtgccggagggcgtgctgatcgacgtcaagaaggccggcgacatccccgaggacgagatc
gtctacatgtccaccggctcccagggcgagccgatggcggtgctcagccggatggcgaac
ctcgaccaccagatccagcccggcgagggcgacaccgtcatcctcgcgtcgagcctcatc
cccggcaacgagaacgcggtctaccgcgtgatcaacggcctgaccaggctcggcgccacc
gtcgtgcacaagggcaacgcgaaggtgcacgtctcgggtcacgccgccgccggcgagctc
atctactgctacaacatcctcaagccgctcaacgtcctgccggtgcacggcgagtaccgc
cacctcgtcgccaacgcgaagctcgcgcaggccaccggcatcgcggaggagaacacgatc
atcgcggaggacggcacagtgctggacctccgcgacggcgtcgtgaccgtggccggccag
ctcgacctcggcttcgtctacgtcgacggctcgtccgtcggcgagatcaccgacgccgac
ctcaaggaccgccgcatcctcagtgaggagggcttcatctcgatcatcgtcgtcgtggag
gcgggcaccggccggatcgtcgtcggtcccgagatccacgccaagggcttcgcggaggac
gacagcgtcttcgacgacgtgaagccgcgcatcgcgaaggccctcgaggaggcggtgcag
agcggagtcagcgaccagcacgcgctctcgcagagcatccgccgggtggtcggccgctgg
gtgaacacgacctaccgccgccgcccgatgatcgtccccctggtcatcgaggcctga
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