Rathayibacter festucae: C1I64_10020
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Entry
C1I64_10020 CDS
T06173
Name
(GenBank) AraC family transcriptional regulator
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rfs
Rathayibacter festucae
Pathway
rfs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C1I64_10020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rfs03000
]
C1I64_10020
03400 DNA repair and recombination proteins [BR:
rfs03400
]
C1I64_10020
Enzymes [BR:
rfs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
C1I64_10020
Transcription factors [BR:
rfs03000
]
Prokaryotic type
Helix-turn-helix
AraC family
C1I64_10020
DNA repair and recombination proteins [BR:
rfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C1I64_10020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
AZZ52352
UniProt:
A0A3T0T1C5
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All DBs
Position
2131277..2132746
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AA seq
489 aa
AA seq
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MVEDPLFEERYRAVASRDSRFDGRFITGVHSTGIYCRPSCPATTPRPANVRFYPTAAAAH
EAGLRACKRCLPDAVPGSPEWNLRDDTAARAMRLIGDGVVDREGVEGLAGRLGYGARQLG
RILRVELGAPPLALARAQRAQTARLLLTGTELPVSEVAFAAGFASIRQFNATIQEVYERS
PSALRASARGGRSEAAVHAGATTLELRLAVRAPFDPGVLAVLGADAVPGLEEAGPGRYSR
SLALPGGPAVVRLEPDGEAIRCTATLVSVADVGPLVARVRRLLDLDADSAAIDEALGADP
VLAPLVSATPGIRLAGSVDPAETLLRALIGLGAPTAVARTALARLVAALGEPLPVGLAAG
GVTHAFPSPAAIAENGADVLRGSEHRNETVRRSAALLADGTLRLDAGLRREDLVERLLAN
DGIDPATAASVAARITGDPDVFPAHDRAVRAGAAALGLPSTPRALAAAARPWAPWRSYAA
RHLAARCHL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaggatccgctgttcgaggagcgctaccgcgcggtcgcctcgcgcgactcccgc
ttcgacggccgcttcatcaccggggtgcactcgaccggcatctactgccggccgagctgt
cccgccacgacgccccggcccgcgaacgtccggttctatccgaccgcggcggccgcgcac
gaggcgggcctgcgcgcctgcaagcgctgcctccccgatgcggtgcccgggtcgcccgag
tggaacctccgcgacgacaccgcggcgcgcgcgatgcggctgatcggcgacggtgtggtc
gatcgcgagggggtcgaggggctggccgggcgcctgggctacggcgcccggcagctcgga
cggatcctgcgggtcgagctgggcgcgcctccgctcgccctggcccgggcgcagcgcgca
cagaccgcgcggctgctgctcaccggcacggagctgccggtctcggaggtggcgttcgcc
gcggggttcgcgagcatccggcagttcaacgcgacgatccaggaggtgtacgagcggagc
ccgagcgcgctgcgggcctcggcccggggaggccggtcggaggcggccgtgcacgcgggc
gcgacgacgctcgagctgcggctcgccgtgcgggcaccgttcgatccgggcgtgctcgcc
gtcctcggcgccgacgcagttccggggctcgaggaggcggggccgggccggtactcgcgc
tcgctcgcgctgcccggcggcccggcggtcgtgcggctcgagccggacggcgaggcgatc
cgctgcaccgcgaccctggtctcggtggccgatgtcggccccctggtcgcgcgggtgcgc
cggctgctcgacctcgacgccgactccgccgcgatcgacgaggcgctcggcgccgatccg
gtgctggcgccgctggtctccgcgactcccgggatccgactggcgggctccgtcgacccg
gccgagaccctgctgcgcgcgctgatcgggctcggtgcgccgaccgcggtcgcgcgcacg
gcgctggcccggctggtcgcggcgctcggcgagccgctgcccgtcggcctcgccgccggc
ggcgtcacccacgcgttcccttcccccgcggcgatcgcggagaacggagcggacgtgctg
cgtggctccgaacaccggaacgagacggtccggcggagtgcggccctcctggctgacggc
actctgcgcctggacgcgggcctccgccgcgaggacctggtggagcgcctgctcgccaac
gacggcatcgacccggccacggccgcgtccgtcgcggcgcggatcaccggcgacccggac
gtcttcccggcccacgaccgcgccgtccgcgccggcgccgccgcactcggcctcccctcg
actccccgagccctcgccgcggccgctcgcccctgggcgccctggcgcagctacgccgcc
cgccacctcgccgcgagatgccacttgtga
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