Rathayibacter festucae: C1I64_11365
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Entry
C1I64_11365 CDS
T06173
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rfs
Rathayibacter festucae
Brite
KEGG Orthology (KO) [BR:
rfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfs03032
]
C1I64_11365 (topA)
03400 DNA repair and recombination proteins [BR:
rfs03400
]
C1I64_11365 (topA)
Enzymes [BR:
rfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C1I64_11365 (topA)
DNA replication proteins [BR:
rfs03032
]
Prokaryotic type
DNA Topoisomerases
C1I64_11365 (topA)
DNA repair and recombination proteins [BR:
rfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C1I64_11365 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AZZ52581
UniProt:
A0A3Q9UZ40
LinkDB
All DBs
Position
complement(2440325..2443285)
Genome browser
AA seq
986 aa
AA seq
DB search
MSGTKKLVIVESPAKAKTIAQYLGEGYEVLASVGHIRDLIEPKNLPPELKKGGLGKFSVD
VDNGFEPYYVVSDQKKKTVADLKRALKNADELFLATDEDREGEAIAWHLLEELKPKVPVK
RMVFHEITKDAIQTARDNTRDIDTSLVDAQETRRILDRLYGYEISPVLWRKVGPGLSAGR
VQSAATRLVVDRERERLAFVSASYWDLATVLAPEADASAAFDARLARLDGKRIGSGRDFD
DRGQLKGDVTVLDEASAGALAEALRDPKTLVRVSNLESKPYSRRPAAPFTTSTLQQEAAR
KLRFSARQTMSVAQSLYENGFITYMRTDSPNLSQQALNAARSQAASLYGAETVPDKPRLY
SGKNKSAQEAHEAIRPAGETFRTPDQLAGTLRGNDHRLYDLIWKRTVASQMADAKGSTAT
VTLLANPAGDTERTAEFTASGTVITFRGFLLAYEEGRDEERHGARDEKDAKLPVLEVGQS
LVVAEVEAKGHETSPPPRYTEASLVKSLEELGIGRPSTYASIITTIVDRGYVTPRGTALV
PNWIAFSVVRLLEEFFSDLVEYDFTAAMEGDLDRIAGGEEDRVDWLNRFYFGGGDQPGLR
HVVDNLGEIDAKSINSVRITDDITLRIGKYGPYLEVAQEEGQETPRRVNLPLELAPDELT
PAKAQELVDAPVQTDRVLGSNPDSGKTVVVKDGRFGPYVTEVDPEPETTADPATGEVVEP
VSAPAAKRGAKKAAAVKPRTSSLFKSMDVATVDLATALRLLDLPRTVGEDPESGEPITAQ
NGRYGPYLKKGTDSRSLTSEDQIFEVDLPTALEVFAQPKYGAKRATSALAEFEADPVSGK
PIRIRDGRFGAYVTDGETNVTIPKGQPIEEIDFEQAVQMLADKRAKSPAPKKAPAKRAPA
KKPAAKTTAAKATATKTTAAKTTAAKTTAAKTTAAKATTAKTTAAKTTAAKTTAAKTTAA
KTTAAKKPATTRARSTAAEATGSTES
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
gtgtccggcacgaagaagctggtgatcgtcgagtcgccggcgaaggccaagaccatcgcc
cagtacctgggcgagggctacgaggtgctcgcctccgtcgggcacatccgcgacctcatc
gagccgaagaacctgccgcccgagctcaagaagggcgggctgggcaagttctccgtcgac
gtcgacaacggcttcgagccctactacgtcgtctccgatcagaagaagaagacggtcgcc
gacctcaagcgcgcgctgaagaacgccgacgagctcttcctcgcgacggatgaggaccgc
gagggcgaggccatcgcgtggcacctcctcgaggagctcaagcccaaggtccccgtcaag
cgaatggtcttccacgagatcaccaaggacgcgatccagacggcccgcgacaacacccgc
gacatcgacacctccctcgtcgacgcgcaggagacccgccgcatcctcgaccgcctctac
ggctacgagatctccccggtcctctggcgcaaggtcgggcccggcctctccgccggccgc
gtgcagtccgccgccacgcgcctcgtcgtggaccgcgagcgcgagcgcctcgccttcgtc
tccgcctcctactgggacctcgccacggtcctcgcccccgaggccgacgcctcggcggcg
ttcgacgcccgcctggcgcgcctggacggcaagcggatcggcagcggccgcgacttcgac
gaccgcggtcagctgaagggggacgtcaccgtcctcgacgaggcctccgccggcgccctc
gccgaggcgctgcgcgacccgaagacgctcgtccgcgtctcgaacctcgagtccaagccc
tactcgcggcgccccgccgccccgttcaccacctcgacgctccagcaggaggcggcgcgc
aagctccgcttctcggcgcgccagacgatgagcgtggcgcagtcgctctacgagaacggc
ttcatcacctacatgaggaccgactcgccgaacctctcgcagcaggcgctgaacgccgcc
cgctcgcaggcggcctcgctctacggcgccgagacggtcccggacaagccgcgcctctac
tccggcaagaacaagagcgcgcaggaggcgcacgaggcgatccgccccgcgggcgagacc
ttccgcaccccggaccagctcgccggcaccctccgcgggaacgaccaccgcctctacgac
ctgatctggaagcgcaccgtcgcctcgcagatggccgacgccaaggggtcgaccgcgacg
gtcaccctgctcgccaacccggccggcgacaccgagcgcacggccgagttcaccgcctcg
ggaacggtcatcaccttccgcggcttcctgctcgcctacgaggagggccgcgacgaggag
cgccacggcgcccgcgacgagaaggacgccaagctgcccgtcctcgaggtcggccagagc
ctcgtcgtcgccgaggtcgaggccaagggccacgagacctcgccgcccccgcgctacacg
gaggcgagcctcgtcaagtccctcgaagagctggggatcgggcgcccctcgacctatgcc
tctatcatcacgacgatcgtcgaccgcggctacgtcacgccgcgcggcacggcgctcgtg
ccgaactggatcgccttctcggtggtgcgcctgctcgaggagttcttctccgacctcgtc
gagtacgacttcaccgccgcgatggagggcgacctcgaccgcatcgccggcggcgaggag
gaccgggtcgactggctgaaccgcttctacttcggcggcggcgaccagccgggcctgcgc
cacgtcgtcgacaacctcggcgagatcgacgcgaagagcatcaactcggtccggatcacc
gacgacatcaccctgcgcatcggcaagtacgggccctacctcgaggtcgcccaggaggag
gggcaggagacgccgcgccgggtcaacctgccgctcgagctggccccggacgagctcacg
cccgcgaaggcgcaggagctcgtcgacgcccccgtgcagaccgaccgcgtgctgggcagc
aacccggactcgggcaagaccgtcgtggtcaaggacggccgcttcggcccgtacgtgacc
gaggtcgacccggagcccgagaccaccgccgaccccgccaccggtgaggtcgtcgagccc
gtctccgctcctgctgcgaagcgcggcgcgaagaaggcggccgcggtcaagccgcgcacc
tcctccctcttcaagtcgatggacgtcgcgaccgtcgacctcgccaccgcgctgcgcctg
ctcgacctgccgcgcaccgtcggcgaggacccggagtcgggtgagccgatcaccgcgcag
aacggccgctacggcccgtacctgaagaaggggacggacagccgctcgctcaccagcgag
gaccagatcttcgaggtcgacctgccgaccgcgctcgaggtgttcgcccagcccaagtac
ggcgccaagcgcgccacgagcgccctcgcggagttcgaggccgacccggtcagcggcaag
ccgatccggatccgcgacggccgcttcggcgcctacgtgaccgacggcgagaccaacgtc
acgatccccaagggccagccgatcgaggagatcgacttcgagcaggcggtgcagatgctc
gccgacaagcgggcgaagagtccggcgcccaagaaggccccggccaagcgcgccccggcc
aagaagcccgccgcgaagacgacggcggccaaggcgacggcgacgaagaccaccgccgcg
aagaccaccgccgcgaagaccaccgccgcgaagaccacggcggcgaaggcgaccacggcc
aagacgacggcggccaagaccacggcggcgaagacgacggccgccaagacgacggcggcg
aagaccaccgccgcgaagaagccggccaccacccgcgcccgcagcactgcggcggaggcg
acgggctcgacggagtcgtga
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