Roseobacter fucihabitans: ROLI_003690
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Entry
ROLI_003690 CDS
T10342
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rfu Roseobacter fucihabitans
Pathway
rfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROLI_003690 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfu03019
]
ROLI_003690 (pnp)
03016 Transfer RNA biogenesis [BR:
rfu03016
]
ROLI_003690 (pnp)
Enzymes [BR:
rfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ROLI_003690 (pnp)
Messenger RNA biogenesis [BR:
rfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ROLI_003690 (pnp)
Transfer RNA biogenesis [BR:
rfu03016
]
Prokaryotic type
tRNA degradation factors
ROLI_003690 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
WVX47302
UniProt:
A0ABZ2BMK7
LinkDB
All DBs
Position
complement(371025..373163)
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AA seq
712 aa
AA seq
DB search
MFNETKKSVQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTISGAPFRGPIAGCRVGFEDGEYILNPTVDDMQDLRLNPEQR
LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQ
PADYSELSAAVKAAGEAEMRAAFAISDKQERTSAVSAARDTIMAALSDAQKEDPNLGSAM
KGLEGSILRGDVVKTGKRIDGRNTDEIRDIVSQTGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPA
STDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGSYA
ILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGE
MAKAITGAQEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKI
ASPNGEAIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEVKKEEAPADE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgaaacgaaaaaatcagtacagtggggcgaagaaacgctgacactggaaaca
ggaaaagtggcccgtcaggcggatgggtcggtgattgcaacgctgggcgaaaccagcgtc
atggcaaacgtcacctttgccaagaaacaaaaacccggtcaggatttctttccgctgacc
gtgcattatcaggaaaaatactatgcggcgggcaaagtccccggtggtttcttcaagcgc
gaagcacgccccactgaaaaagaaacgctgaccgcgcgtctgattgaccgccccctgcgt
ccgcttttcgtccccggcttcaaaaacgaagtgctggtgatgtgtacggttctgtcccac
gatctggtcaatgaccccgacatggttgcgatgatcgcggcctccgcggcgctgacgatt
tccggcgcgccgttccgtggtccgatcgccgggtgccgcgttggttttgaggatggcgaa
tacatcctgaacccgactgtggatgacatgcaggacctgcgtctgaaccctgaacaacgc
cttgatctggttgttgccgggaccaaggacgcggtgatgatggttgaatccgaggcttat
gagctgtctgaggcagaaatgctcggtgcggtgaaatttgcccatgagcaaatccaaccc
gtgatcgatttgatcattgatctggccgaagatgccgccaaagagccgtttgatttccag
cctgcggattattcggagctgtctgctgcggtcaaagcggctggcgaggcagaaatgcgc
gccgctttcgcgatttcggacaaacaggaacgcacaagcgccgtttcggccgcccgtgac
accatcatggccgccctcagcgacgcgcaaaaagaagacccaaacctcgggtccgccatg
aagggcctcgagggttccatcctgcgcggcgacgtggtgaaaaccggcaagcggattgac
ggtcgtaacaccgacgaaatccgtgacatcgtgtcccaaacgggtctgttgccccggacg
catggctcggcgctgttcacacgcggcgaaacgcaaggtctggttgtgaccacgctgggc
accggtgatgatgagcaattcatcgacgcgctgcatggaaacttcaaatccaacttcctg
ctgcactataacttcccgccctattcggtcggtgaagccggtcgcgtgggccctcccggt
cggcgtgaaatcggtcacggcaaattggcgtggcgcgcgttgcaagccgttctgcccgca
tcaacggatttcccctacacgatccgcgttgtgtccgaaatcaccgaatccaacgggtca
agctcgatggcgtcggtctgtggtggttccttgtctatgatggacgcgggtgtgccgctc
aaagcaccggttgccggtgtggcgatgggtttgatcctcgaagaggacggctcctacgcg
atcctatccgacatccttggtgacgaagaccacctcggcgacatggatttcaaagtggcg
ggtacagaagccgggatcacatccttgcagatggacatcaagatcgcaggcatcacgccc
gagatcatggagaaagctctggagcaggccaaagccggccgcatccacatcctgggcgag
atggccaaagccatcaccggcgcgcaggaattctcggtccacgcaccgcgcatcgaaacc
atgcagatcccaacggataaaatccgcgaagtgatcggttcgggcggtaaagtgatccgc
gagatcgtcgaagtgtccggcgccaaagtcgacatcaacgacgaaggcatcatcaagatt
gcaagcccgaacggcgaggcgatcaagaaggcctacgacatgatccattccatcgtggcc
gaacccgaagaaggcatggtttacaccggaacggttgtgaaaattgtcgatttcggagcc
ttcgtgaacttctttggcaaacgcgatggtctggtgcatgtctcccagatcgaaaaccgc
cgtttgaaccatccttccgacgttcttaaggaaggccaggaagtgaaggtcaaacttctg
ggctttgatgaccgcggcaaggtgcgcctgtcgatgaaagtcgtcgatcaggaaaccggc
gaagaagtcaaaaaagaagaagcgcccgcagacgaataa
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