Roseobacter fucihabitans: ROLI_011350
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Entry
ROLI_011350 CDS
T10342
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rfu Roseobacter fucihabitans
Pathway
rfu03420
Nucleotide excision repair
rfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ROLI_011350 (pcrA)
03430 Mismatch repair
ROLI_011350 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfu03400
]
ROLI_011350 (pcrA)
Enzymes [BR:
rfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ROLI_011350 (pcrA)
DNA repair and recombination proteins [BR:
rfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ROLI_011350 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
ROLI_011350 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
DEAD
DUF3553
Motif
Other DBs
NCBI-ProteinID:
WVX48057
LinkDB
All DBs
Position
1119302..1121866
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AA seq
854 aa
AA seq
DB search
MRVMSNFDEMDAFDGASLSRRAMAARPQPYLDGLNPAQRTAVETLDGPVLMLAGAGTGKT
RALTARIVHLLNTGRARPNEVLAVTFTNKAAREMKNRVGAMMGQQIEGMPWLGTFHAICV
KLLRRHAELVGLKSNFTILDTDDQLRLLKQLVRAEGIDDKRWPARQLAGIIDGWKNRALT
PDKVPSSDAGAYNHRGTEIYAQYQTRLRELNATDFGDLLMHMVTIFQNHPDILAQYQRWF
AYILVDEYQDTNVAQYLWLRLLAGGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGA
HVVRLEQNYRSTPHILAAASGVIEGNEGRLGKTLWTAAEEGEKIRLIGHWDGEEEARWIG
DEIEALNDGSSILAKRRQNSRSEQMIREFKRLAELDALRGLNSRDQLFDRLKTQKSFLAD
ESRRDLVWELATRQSEGHSLEPAFLRYGRDELAILVRASHQMRAFEDRFLTIGLPYRVIG
GPRFYERMEIRDAMAYFRIVTSPDDDLAFERIVNTPKRGLGDKAQQTIQRVARENGVSLV
EGARLVVQAKGIGGKGGKELATLVTGIDRWGRMAGSSDLSHMELAEIILDESGYTTHWQN
DKTPEAPGRLENLKELVKALEQFENLQGFLEHVSLIMDNESEEGGEKVSIMTLHAAKGLE
FPMVFLPGWEDGLFPSQRSMDESGVKGLEEERRLAYVGITRAEEVCTISFAANRRVFGQW
QSALPSRFIDELPPEHVDVLTPPGLYGGGYGAAAPTSNLHEAAAEANVYNSPGWRRLQAR
SQERGMSQPRETKNTVIDMTAVSSFTVGERVFHQKFGYGAIQGIEGDKLEIAFEKAGIKK
VVAKFITGCDDIPF
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcgttatgagcaattttgatgaaatggatgccttcgatggcgcatccctatcccgg
cgcgcgatggccgcgcggccacaaccctatctggatgggctgaacccggcgcaacgcacg
gccgttgaaacgctggacgggcctgttttgatgctggccggggcggggacgggcaagacc
cgcgctctgacggcgcgcatcgtccatttgttgaataccgggcgggcgcggcccaatgag
gtgctggccgtgacctttaccaataaggccgcacgggagatgaagaatcgcgtaggtgcg
atgatggggcaacagatcgaggggatgccctggctcgggaccttccatgcgatctgtgtg
aaactattgcgccgtcacgccgaattggttgggctgaaatccaatttcaccattctggat
accgatgatcaattgcgcctgctgaaacaattggtgcgcgcggaagggatcgacgacaag
cgctggcctgcgcggcaattggccgggatcatcgacgggtggaaaaaccgcgcgctgacg
cccgacaaggtgcccagcagtgacgctggggcttataaccatcgcggcaccgagatttat
gcgcaataccagacccgtctgcgagaactgaacgccacggatttcggcgatctgctaatg
catatggtcacgatcttccagaaccacccggatattctggcgcaatatcaacgctggttt
gcctatattctggtggatgaatatcaggacaccaacgttgcgcaatacctctggctgcgc
ctgctcgcgggggggcataagaacatctgctgcgtgggcgatgatgatcagtcgatttat
ggctggcgcggggccgaagtgggcaatatcctgcggtttgaaaaggattttcccggcgcg
catgtggtgcggctggaacagaactaccgctcgaccccgcatattctggccgctgcatca
ggtgtgattgagggcaatgagggacgtctgggcaagacgctttggactgcggccgaagaa
ggtgaaaaaattcgactaatcggtcactgggacggcgaggaagaggcgcgctggattgga
gacgagatcgaggcgctgaatgatggaagttcaatcctggccaagagaaggcaaaattct
cgatctgaacagatgatccgcgaatttaagcggcttgctgaattggatgctttgcgagga
ttgaacagtcgagatcaattattcgatcgtttgaaaacgcaaaagagctttttggcggat
gaaagcaggcgggatttggtgtgggagttggcaaccaggcagagtgaggggcattctctt
gaacctgcgttcctaagatatggtcgcgatgagttggccattctggtgcgtgccagccat
cagatgcgcgcctttgaggatcgtttcctgaccatcggcctgccgtaccgcgtgatcggt
ggcccacggttttacgagcgcatggagatccgggatgccatggcctatttccgcatcgtg
accagccccgatgatgatctggccttcgagcggatcgtgaacacgcccaaacgcggcctt
ggtgacaaggcgcaacaaacgatccagcgcgtcgcgcgcgagaatggggtgagccttgtg
gagggcgcgcggctggtcgtgcaggccaagggcatcggcggcaaagggggcaaggagttg
gccacattggtcaccggaattgatcgatgggggcggatggcggggtcgagcgatctgagc
cacatggagctcgccgaaatcattctggacgaaagcgggtacacaacccattggcagaac
gacaaaacgcccgaagcgccggggcgtttggagaatctcaaggagttggtcaaggcgctg
gagcagttcgaaaacctgcaggggtttctggagcacgtcagcctgatcatggacaatgag
agcgaggagggcggcgaaaaggtgtcgatcatgacgctgcacgcggccaaggggctggaa
ttcccgatggtgtttttgccagggtgggaggacgggttgttcccctcgcaacgctcgatg
gatgaaagcggcgttaagggcctcgaagaagaacgacgtctggcctatgtcgggatcacg
cgcgccgaagaggtctgcacgatttcctttgccgccaatcgacgcgtgttcggccaatgg
caaagcgcgctgccctcgcgcttcatcgatgaattgccacctgaacatgtcgatgtgctg
accccgcccggcctttatggcggtggttacggtgccgccgcgccgacatccaacctgcat
gaggccgcggcagaggcgaatgtctataactcacctggctggcgtcgtttgcaggcgcgt
agccaggagcggggcatgagccagccgcgcgaaactaagaataccgtgatcgacatgacc
gccgtgtcgagtttcaccgtgggcgagcgggtgtttcatcagaagttcggctatggtgcc
attcaggggatcgagggcgacaagctggagattgcctttgagaaggcgggcatcaagaag
gtcgtggcgaaattcattaccggatgtgacgacatcccattttga
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