Roseobacter fucihabitans: ROLI_019290
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Entry
ROLI_019290 CDS
T10342
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rfu Roseobacter fucihabitans
Pathway
rfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROLI_019290 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfu03019
]
ROLI_019290 (rhlE_2)
Enzymes [BR:
rfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ROLI_019290 (rhlE_2)
Messenger RNA biogenesis [BR:
rfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ROLI_019290 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
DUF8086
Motif
Other DBs
NCBI-ProteinID:
WVX48846
UniProt:
A0ABZ2BSM5
LinkDB
All DBs
Position
1950482..1951789
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AA seq
435 aa
AA seq
DB search
MSDFDMMDLPAKLVARLTEMGLKDPTPIQKQAIPHALNGRDVMGLAQTGTGKTAAFGVPI
VAQMMALEGRPAPKSVRGLVLAPTRELATQISVNLRAFAEGTPIKVAMVVGGQSINNQIK
RLERGVDLLVATPGRLLDLMDRRAVRLNEAVFLVLDEADQMLDMGFIHDLRKIASVIPKE
RQTMLFSATMPKQMNELAQSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEKPALLIEML
DKHREERALVFGRTKHGSEKLMKNLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVLV
ATDVAARGLDIPDVKHVYNFDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKAI
QKTMGVSIPVGSGRPWEGADIPEGTKPKGRGRGRGGRPQGGGNGGGGQPAQGQKPGGGRN
RRRGGKPGGGGQRAA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattttgatatgatggacctgccagccaaactggtggcacgtctgactgaaatg
ggtctgaaagacccgaccccgatccagaaacaggcgatcccacatgcgctgaatgggcgc
gacgtgatgggtctggcccagacagggacgggcaagacggcagcctttggcgtaccgatc
gtggcgcagatgatggcgcttgaagggcgcccggcacccaaatcggtgcgcggtctggtg
ttggcaccgacccgtgaattggccacacagatcagcgtcaacctgcgcgcctttgccgaa
ggcaccccaattaaggtggcgatggtcgtcggtgggcaatcaattaacaaccaaatcaag
aggttggagcgcggtgttgatcttctggtggcgacaccgggacgcctgctcgacctgatg
gatcgccgcgcggtgcggctgaatgaagcggtgtttctggtgctggacgaggcggatcag
atgctcgacatgggcttcatccatgatctgcgcaaaatcgccagcgtgatccccaaggaa
cgccaaaccatgctgttttcggccaccatgcccaagcagatgaacgaactggcccaaagc
tatctgcgcagcccgatccgggtggaagtctcgccgccgggcaaagccgccgataaggtc
acgcaggaagtgcattttatcgccaaatccgaaaaacccgcgctgttgatcgaaatgctg
gataagcaccgcgaagaacgcgcgctggtatttgggcgtacgaaacacggctctgaaaag
ctgatgaaaaaccttgtcaaagccgggtatgccgccggatccatccatggcaataaatcc
caaggtcagagggaccgcgcgattgccgcctttaaatcaggtgaaattaaggtgttggtt
gcaacggatgttgccgcgcgcggcctggacatcccggatgtgaaacacgtctataatttt
gatctgcccaatgtgccggataattatgtacaccggatcgggcggacggcgcgggccggt
aaagacggcgcggccattgccttttgcgcccccgatgagatgggcgagttgaaggccatt
caaaagaccatgggggtcagtatcccggtcgggtctggacgcccgtgggaaggcgcggat
attcccgaaggcaccaagcccaagggaaggggtcgcggacgcggtggacgaccacagggc
ggcggtaacggtggcgggggccaaccggcacagggtcaaaagcccggtggtggacgcaat
cgtcgtcgcggcggcaaacccggtggtggcggtcaacgcgccgcctga
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