Roseobacter fucihabitans: ROLI_023830
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Entry
ROLI_023830 CDS
T10342
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rfu Roseobacter fucihabitans
Pathway
rfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROLI_023830 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfu03019
]
ROLI_023830 (rne)
03009 Ribosome biogenesis [BR:
rfu03009
]
ROLI_023830 (rne)
Enzymes [BR:
rfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ROLI_023830 (rne)
Messenger RNA biogenesis [BR:
rfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ROLI_023830 (rne)
Ribosome biogenesis [BR:
rfu03009
]
Prokaryotic type
rRNA processing factors
ROLI_023830 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Staufen_C
Motif
Other DBs
NCBI-ProteinID:
WVX49293
LinkDB
All DBs
Position
complement(2380977..2383691)
Genome browser
AA seq
904 aa
AA seq
DB search
MQIGFMAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQ
AAFVDYGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKAKEDEEEKPKRRTR
SRSRAKPKAAEAANDDATASRDVDADQIGGMETIDLDDEEGSSPMERVAETPVEEPDGDP
TDAGADVEAHEDDDDTPARKTDAAAKDDTIESVADDDDHEDIRPVRKPRPRRYKIQEVIK
VRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEI
ANEIEVPQGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRDLTLKSVAPAKIYEEGDLI
KRSIRDLYNRDIDEVFVEGERGYRIAKDFMKMIMPSHAKNVKLYTENLPLFARFQVESYL
AGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRATKEGSIEQTATKTNLEAAAEVARQLR
LRDLAGLIVIDFIDMDERKNNAAVEKMMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPG
MIEATTQPCQACHGTGLIRSDDNLALSILRQIEEEGTRKRSREVLVTAPVGIANFLMNQK
REHIAHIEARYGLSVRIEGDPTLVSPDFSLEKFKTATRVVPVVSAHVVSVDTSLMDQVDA
DDDADVVVEDEAPAPQAPEAESARQNGEDGDGDAKPKRRRRRRRRSRNKSNGAESEQSHE
ASGETSESAPAQEETSKPAENGAAPEAEPASKVEEPVAVAPEGEAEKPKPRRRSRTSKAK
AEAVSEAAASEGAASEAPAPTEGEPEEAPKPKRKRASRAKKPKVEEVGAADASADTAPAQ
ATPEVAPEEAPAEVKAAAAAPEPVAVAPAAPVQAEPETVAAAPEPTAEPKPAKPKRKGWW
SLGG
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattggatttatggctaagaaaatgcttatcgatgccacccacgcggaggaaacc
cgcgtcgtggtggtggatggaaacaaggttgaagagttcgattttgaatccgaaaacaaa
cgccagctcgctggcaatatttacctcgcaaaagtaacacgggtcgagccgtcgcttcag
gcggctttcgtggattatggcggcaatcgccatggcttcctggcgttctcggaaatccat
ccggattattatcagattccagtggcagaccgtcaggcgctgatggaagaagagcgcgcc
tatgccgaagcgcagaaggccaaggaagacgaggaagaaaaaccaaagcgccgcacgcgc
agccgcagccgtgccaagccaaaggctgccgaggcggccaatgatgatgcgaccgcatcg
cgtgatgtggacgccgatcagatcggcgggatggagaccattgatctcgacgatgaggaa
ggctcttcgccaatggagcgcgtggccgagacgccggtggaggagcccgatggggaccca
actgatgcgggcgcagatgtcgaggcgcatgaggatgatgatgacaccccggcgcgcaaa
accgatgctgccgccaaggatgacaccatcgaatccgtggccgatgatgatgaccatgaa
gacattcgtcccgtgcgcaaaccacgcccgcggcgctacaagattcaggaagtcatcaag
gtccgtcaaatcctgctggtgcaggtcgtcaaggaagagcgcggcaacaaaggcgcggct
ctgaccacgtatctgtctttggcgggtcgttattgcgtgctgatgccgaacacggcgcgc
ggcggtgggatttcgcgcaagatcaccaatgcggtggatcgcaagaagctcaaggaaatc
gccaatgagatcgaagtgccccagggtgccgggctcatcgtgcgtaccgccggggccaaa
cgcaccaaggccgaaatcaagcgtgactatgaatatctgcaacggctgtgggagcaaatc
cgcgatctgacgctgaaatctgtggcacccgcgaagatttatgaagaaggcgatctgatc
aaacgctcgatccgcgacctttataatcgtgatatcgacgaggtgtttgtggagggcgag
cgcggttaccgcatcgccaaggacttcatgaagatgatcatgccatcccacgcgaaaaac
gtgaagctttacactgaaaacctgccgcttttcgcgcgttttcaggtcgaaagctatctg
gcggggatgttcaatccgacggttcaattgccctcgggtggctatatcgtgatcggcgtg
acggaagcgctggtggcgattgatgtgaactctggacgcgcgaccaaggaaggctcgatt
gagcagaccgcgaccaagaccaacctggaggctgccgcagaggtggcgcgccaattgcgt
ctgcgggatctggccgggctgatcgtgatcgacttcatcgacatggacgagcgcaagaat
aacgccgccgtcgagaagatgatgaaggataagctcaagaccgaccgtgcgcgcattcag
gtcggtcggatttccggtttcggtctgatggaaatgtcgcgtcagcgtctccgccccggt
atgattgaggcaacgacgcagccttgtcaggcctgtcatggcaccggtctgatccgctca
gacgacaatcttgcgctatccatcctgcgccagatcgaagaggaaggcacccgcaagagg
tcacgcgaagtgctggtcacagcgcccgtcgggattgccaatttcctgatgaaccagaaa
cgcgaacacatcgcccatatcgaagcacgctatgggttgtcggtgcggatcgaaggggat
ccgacgctggtcagcccggatttcagccttgagaagttcaagacggcgacgcgtgttgtg
ccggtggtctctgcgcatgtggtgtctgtcgatacctcgctgatggatcaggtagatgcg
gatgacgacgccgacgtcgttgtcgaggatgaagcccctgcaccgcaggcaccggaagcg
gagtccgcgcgccagaacggtgaagacggtgatggagacgccaaacccaagcgccgtcgc
cgtcgtcggcgtcgtagtcgcaacaaatccaatggtgctgagagtgagcagtcccacgag
gcctctggcgagacatctgaaagcgcacccgcgcaggaagagacgtccaagcccgccgag
aacggcgcagcgccggaagctgaaccagcctccaaggtcgaagagcccgttgcggtggca
ccggagggtgaggccgaaaagccgaaacctcggcggcggtcgcgcaccagcaaggcaaag
gccgaagccgtgagtgaagccgcggcctcagaaggagcggccagcgaagcgccagccccg
acagagggtgagccggaggaggcacccaagcccaagcgcaaacgtgccagccgcgccaag
aagccgaaggttgaggaggtcggggccgccgacgcgtcagcggacaccgcacccgcacaa
gcgacaccagaggtcgcgcctgaggaggcccccgcagaggttaaggccgctgctgccgcg
cccgagccggtcgctgtggcacccgccgcgcctgtgcaggccgagccagagacggttgca
gctgcgcccgaacccaccgcagagcccaagcctgccaagccaaagcgcaagggctggtgg
tccttggggggctaa
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