KEGG   Roseobacter fucihabitans: ROLI_026100
Entry
ROLI_026100       CDS       T10342                                 
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
rfu  Roseobacter fucihabitans
Brite
KEGG Orthology (KO) [BR:rfu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rfu03400]
    ROLI_026100 (dbpA)
Enzymes [BR:rfu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ROLI_026100 (dbpA)
    5.6.2.6  RNA 3'-5' helicase
     ROLI_026100 (dbpA)
DNA repair and recombination proteins [BR:rfu03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    ROLI_026100 (dbpA)
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: WVX49515
LinkDB
Position
2601473..2603920
AA seq 815 aa
MRVLPQKFTDWFASKGWHIHPHQRDMLDRAEAPALLLIAPTGGGKTLAGFLPTLVDLAQV
PHDGLHTLYISPLKALAADIRRNLTTPVTEMGLDIRIEDRTGDTPASRKKRQRADPPHIL
LTTPESLALLTSYEDAPRMFKGLKRVVVDEIHALAESKRGDQLMLALGRLQRLCPDLRRV
GLSATVEDPAAIAQHLARHPDPCEILMADPGPAPDISMLTTEQPPPWAGGNAAYAIPAVL
EEVRKHNTTLIFHNTRAQAEIFFHNLWLANEDSLPIGIHHGSLDRQQRERVEAAMVRGEL
RAIVCTGSLDLGIDWGDVDLVIQIGAPKNVKRLVQRIGRANHRYNAPSKALLVPANRFEV
VECVAALDAVRDGALDGEPRGSGPRDVLCQHILITACAGPFDADALFAEITTVGAYAGLS
RAEFDDCLTFCATGGYALRAYDQWQRLQQRGDGAWHLRDPRAAQKIRMNIGTIQDTDTLK
VRLRRNRGGKPLGEVEEGFAATLTPGDTFLIGGQIVKYEGLREMTVEVSRHAAKKPKVAT
FMGTKFATSTVLSARVVEMFQQEDWPALPAHTADWLALQRRVSQLPKPGRLLIESFPHDG
REQTVIYGFAGRNGQQTLGLLLTKRMEEIGLNPLGFVATDYATLIWGLDAVQDPAPLFDL
AALKDGLDTWLAGNAVMKRTFRASATIAGLIQRNSPSARKSGRQATFSSDILYDTLQKYD
PDHLLLDITREEAMRGLVDFGRIKEMAQRIGGRIDHLKLSRVTPLAAPMLLEMGRVPVKG
AAEEKLLAQEAASLMEQSGLAEITPAAAPHWRAGS
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgcgcgtgcttccccagaaattcacagattggtttgcctccaaaggctggcacatccat
ccgcatcaacgcgacatgctggatcgcgccgaggccccggccctcctgttgatcgcgccc
acgggcggcggcaagacgctcgccggattcctgcccacgctggtcgatctggcacaggtg
ccgcatgatggtttgcacacgctttatatttcgccgctcaaggcgctggccgccgatatc
cgccgcaatctcacgacgcccgttaccgaaatgggccttgatatccgcatcgaggaccgc
accggcgacacccctgccagccgcaagaaacgccagcgcgccgatccaccccatatcctg
ctgaccacgccggaaagccttgcgctactgacctcctatgaagacgcgccgcgcatgttc
aaggggttgaaacgcgtggtggtcgatgaaatccacgcattggcggaatccaaacgcggg
gatcaattgatgctggcgctggggcggttgcaacggctctgccccgatctgcggcgcgtc
gggctgtccgcaacggtggaagaccccgctgccatcgcgcaacacctcgcacgtcacccc
gacccttgcgaaatcctcatggccgaccccggaccggcacccgatatttccatgctcacg
acggaacagcccccaccctgggccgggggcaacgccgcctacgcgatccccgccgtgctg
gaggaggtacgtaaacacaacaccacgctgatctttcataacacccgcgcgcaggcggag
atcttctttcacaacctttggttggccaatgaggacagtttgcccatcggcattcaccac
ggctcgctcgaccgccagcaacgcgaacgcgtcgaagcggcgatggtgcgcggggaatta
cgcgcgattgtttgtaccgggagcctcgatctgggcattgattggggcgatgtcgatctg
gtgatccagatcggtgcgcccaagaacgtcaagcggctggtgcaacggatcgggcgggcc
aatcaccgctataacgcgccctccaaggcgctgctggtcccggcgaaccgctttgaggtg
gtggaatgtgttgccgcgctggacgccgtgcgcgacggcgcgctggatggtgagccgcgc
gggtccgggccgcgcgatgtgctgtgccaacacatcctgatcaccgcctgtgccggtccg
tttgatgcggatgcgctgtttgcggaaatcacaaccgtcggggcctatgcggggctgtcg
cgcgctgaatttgacgactgccttacgttttgcgcaaccgggggatatgctctgcgcgcc
tatgatcaatggcaacgcctgcaacaacgcggcgatggtgcctggcatctgcgcgatccg
cgcgccgcgcagaaaatccgtatgaacatcggcacgatccaggataccgatacgctcaag
gtccgcctcagacgaaatcgtggcggcaaaccgctgggtgaagtcgaagaggggtttgcg
gccacgctcacgcccggcgatacgtttctgatcggcgggcagatcgtgaaatacgagggc
ctgcgcgaaatgaccgtcgaagtgagccgccatgcggccaaaaagcccaaggtcgcgacc
ttcatgggcacgaaatttgccacctccaccgtgctcagcgcccgcgtggtggagatgttc
caacaggaagattggcccgccctgcccgcgcataccgccgactggctggccctgcaacgc
cgcgtcagccaactgcccaaaccgggccgcttgctgatcgagagcttcccccacgacggg
cgcgaacagacggtgatctatgggtttgccgggcgtaatgggcagcagacattagggctg
ttgttgaccaagcggatggaggaaatcgggctcaacccgctggggtttgtcgccaccgat
tatgccacgttgatctggggtctggatgccgtgcaagacccggcgccgctctttgatctc
gccgccctaaaggacgggctggacacctggctggccggaaatgcggtgatgaaacgtacc
tttcgcgccagcgccacgattgccgggctcatccagcgcaacagcccttcggcgcgcaaa
tccggccggcaggcgacgttcagttcggatattctgtatgacacgctgcaaaaatacgat
cccgaccacctgcttttggatatcacccgcgaagaggcgatgcggggcctcgttgatttt
ggacggatcaaagagatggcacagcgtatcggcgggcggattgatcacctcaagctgtcg
cgtgtgacaccgcttgccgcaccgatgttgctggaaatgggccgggtgccggtcaaggga
gccgccgaagaaaagctgctcgcgcaggaagccgcaagcctgatggaacaatccggcctt
gccgagatcacgccagccgccgccccgcactggcgcgccggttcttga

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