Roseobacter fucihabitans: ROLI_028490
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Entry
ROLI_028490 CDS
T10342
Symbol
rafR
Name
(GenBank) HTH-type transcriptional regulator RafR
KO
K02529
LacI family transcriptional regulator, galactose operon repressor
Organism
rfu Roseobacter fucihabitans
Brite
KEGG Orthology (KO) [BR:
rfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rfu03000
]
ROLI_028490 (rafR)
Transcription factors [BR:
rfu03000
]
Prokaryotic type
Helix-turn-helix
LacI family
ROLI_028490 (rafR)
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Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_3
Peripla_BP_1
LacI
HTH_24
HTH_3
HTH_IclR
MarR_2
HTH_11
HTH_AsnC-type
MarR
HTH_5
Motif
Other DBs
NCBI-ProteinID:
WVX49754
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Position
2857085..2858116
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AA seq
343 aa
AA seq
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MNLRELSERLNLSQTTVSRALNGYPEVNEATRKRVADAATLYNYRPNIRAQRLATGRSMS
VGHIIPFSKKNEMVNIVFADFITGAGEIYSRHGYNMTLSVVRDEDEIETYRTLSEQGAVD
GIIVHSPTRDDPRIPFLADLDIPFLVHGRASEVTTPYSWLDVNNTRAIERGTEYLLELGH
SRIGFINGQEHMDFAQRRREGYLAALRAQGVAADKTLMRSGEMSEPFGHASTVQMLDGPH
PPTAFVTSSIVPALGVRRAVQERGLHMGRDISILCFDDDISYLPNGLETPVFTAMRSSVR
AAGRRCAQILMEQIASGSGGVRTELWDAELIVGQSTGPGPQRT
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgaacttacgcgaactctctgagcggttgaacctgtcccaaacgacggtaagccgcgcg
ctgaatggctatccggaggtcaatgaagccacccgcaaacgcgtcgccgacgcggcgacc
ctgtataattatcggcccaatattcgcgcccagaggctcgcaacgggccgttccatgtcg
gtcggccatatcatccccttctcgaaaaagaatgaaatggtgaatatcgtctttgccgac
ttcataaccggtgcgggtgaaatctattcgcgccacggctataatatgacgctctcggtt
gtgcgcgatgaagacgaaattgaaacctaccgcaccttgagcgaacagggcgcggtcgat
gggatcatcgtgcattcgcccacgcgggatgatccgcgcatccccttcctggccgatctg
gacattccgtttctcgtgcatgggcgggcctccgaggtcaccactccctattcctggctg
gatgtgaacaacacgcgcgccatcgaaaggggtaccgaatatctgctggaactcgggcat
tcgcgcatcgggttcatcaatggccaggagcatatggattttgcacaacgccgccgcgag
ggttacctggcggcgctgcgcgcgcagggtgtggcggcggacaaaaccctcatgcgatcc
ggcgagatgagtgagccctttggccatgcatcgaccgtgcagatgttggatgggccgcac
ccgcccaccgcctttgtcacctcctccatcgtcccggcgctgggggttcgccgcgcggtt
caagaacgtgggttgcacatggggcgggatatttcgatcctgtgctttgacgacgatatt
tcctatctgcccaacgggttggaaacgccggtattcaccgcaatgcgctcttcggtacgg
gctgccggacgccgctgtgcgcagattttaatggaacagatcgcgtccggctcgggcggc
gtgcgcacggaactctgggacgcggaattgattgtgggccaatcaaccggtcccggccct
caaaggacataa
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