Roseobacter fucihabitans: ROLI_031620
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Entry
ROLI_031620 CDS
T10342
Symbol
agpA
Name
(GenBank) Periplasmic alpha-galactoside-binding protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
rfu Roseobacter fucihabitans
Pathway
rfu02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rfu00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ROLI_031620 (agpA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rfu02000
]
ROLI_031620 (agpA)
Transporters [BR:
rfu02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
ROLI_031620 (agpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Gln_deamidase_2
Motif
Other DBs
NCBI-ProteinID:
WVX50066
LinkDB
All DBs
Position
3142349..3144361
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AA seq
670 aa
AA seq
DB search
MLKPLALLLLMLALPLSAQAQIQVARSEAPVAQPKSTAPKMQTATSELLAAPPQESSFWQ
KEVANGNLPPVTARMPREPLVVDLPAKGRSFGEQGGTLRTLVSRSKDVRQMVVYGYARLV
GYDQDYNLYADILRDIEVVEGRKFTLHLRKGHRWSDGHPFTSADFEYWWKHVAQNIEISP
AGPPQHMIMDGVLAEMTFPDAHTVVIEWPTPHPQFLQLLAQASPFFIYRPAHYLKQFHAE
FTDAKTLKRAVKKARLRSWAPLHNDRDNMYKFDNPELPTLQPWMNATGTKSSRHLFVRNP
YYHRMDARGVQLPYIDIVEMTIVGGGLIAAKANAGEVDLQARGLDFPDISILKKGETDGA
GYRTLLWANGAANQITIYPNLNFADPVWRDVIRDVRFRRALSLGIDRRMINRALYFGLAK
EGGMTALAQSPFFDPANLFSWSIYYPAKANALLNEMGLVERTADGIRKLPDGRPMEFVIE
TAGERQEVENALAIITDTWREIGIKLIMRPLDRDILRNRVYSGLSMSAVWFGWDNGLPQP
YTPPEYLAPTHQEFFAWPKWGQYYQTGGEVGEAPDMPAAKRLMQLSWDWDHTTDIEKRAA
IWREMLAIHADEQFGIGILAEAPQPVVVSDRLRNVPEVAKWAWDPGAHFGIHRIDEFYYD
DPFQQLTKSQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaaccccttgccctccttctcttgatgttggcccttcccctcagcgcgcaggca
caaatacaggtggcgcgcagtgaagcccccgtcgcgcagcccaagagcaccgcgcctaaa
atgcagaccgccacatctgaactcctggctgcgccgcctcaggaaagcagcttttggcaa
aaggaagtcgccaatggcaacctgccccccgtcaccgcgcgcatgccccgcgagccgctg
gtggttgacctgcccgccaaggggcgcagcttcggcgagcagggcggcacgctgcgcacc
ctcgtgtcgcgctccaaggacgtgcgccagatggtggtttacggctatgcccgccttgtg
ggctatgatcaggattacaacctttatgcggatatcctgcgcgacatagaagtggtggag
gggcgtaaattcaccctgcatctgcgcaaggggcaccgttggtcggatgggcatcccttt
acctcggccgatttcgaatactggtggaaacatgtcgcccagaacatcgaaatcagcccc
gcaggcccgccccagcatatgatcatggacggtgtgctggccgaaatgaccttcccggat
gcgcataccgtggtcatcgaatggccgaccccgcacccgcaattcctgcaactgctggcg
caggccagcccgtttttcatctaccgtccggcgcattacctcaagcagttccacgctgaa
tttaccgatgccaaaacgttgaaacgcgcggtcaaaaaggcgcgattgcgctcctgggct
ccgctgcataacgaccgcgacaacatgtataagttcgataatcccgaactgccgacattg
cagccgtggatgaatgcgaccggcacgaaatccagccgccacctgtttgtgcgcaacccc
tattatcaccgcatggacgcgcgcggcgtgcaattgccctatatcgacattgtggaaatg
accatcgtgggcggcggtctgatcgcggccaaggcaaatgcgggcgaggtcgatttgcaa
gcgcggggcctcgattttcccgatatttcgatcctcaagaagggcgaaaccgatggcgcg
ggctatcgcacgctgctctgggccaatggcgcggccaatcagatcacgatttatcccaac
ctcaatttcgccgatccggtctggcgcgatgtgatccgcgatgtgcgcttccgccgcgcg
ctctcgcttggcatcgaccggcgcatgatcaaccgcgcactttactttgggctggccaag
gaaggcggtatgaccgcgctcgcccagagcccgttttttgacccggcgaacctcttttca
tggtcgatctattatccggccaaggccaatgcgctgttgaatgaaatggggctggtggaa
cgcaccgccgatggcatccgcaaattgcccgacgggcggcccatggaattcgtgatcgaa
accgccggtgaacgccaggaggtcgaaaacgcgctggccatcatcaccgatacctggcgc
gagatcgggatcaaactgatcatgcgtccgctggaccgcgacatcctgcgcaaccgcgtc
tattcgggcctgtcgatgtccgcggtctggtttggctgggacaacggtctgccccaaccc
tatacgcctccggaatacctcgcaccgacgcatcaggagttctttgcctggcccaaatgg
gggcaatattaccagaccggcggcgaggtcggcgaagcgcctgacatgcccgccgccaag
cgtctgatgcaattgagctgggattgggaccacaccaccgacatcgagaaacgcgccgcg
atctggcgcgagatgctggccatccacgcggatgaacaattcggcatcggcatcctggcg
gaggccccgcaacccgtcgtggtatcggaccgcctgcgcaatgtgcccgaggtggctaaa
tgggcctgggatccgggcgcgcatttcggcatccaccggatcgacgaattctattacgat
gacccgttccagcagttgaccaaatcccaatga
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