Roseobacter fucihabitans: ROLI_033750
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Entry
ROLI_033750 CDS
T10342
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rfu Roseobacter fucihabitans
Pathway
rfu03030
DNA replication
rfu03430
Mismatch repair
rfu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ROLI_033750 (dnaE1)
03430 Mismatch repair
ROLI_033750 (dnaE1)
03440 Homologous recombination
ROLI_033750 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfu03032
]
ROLI_033750 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rfu03400
]
ROLI_033750 (dnaE1)
Enzymes [BR:
rfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ROLI_033750 (dnaE1)
DNA replication proteins [BR:
rfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ROLI_033750 (dnaE1)
DNA repair and recombination proteins [BR:
rfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ROLI_033750 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WVX50278
LinkDB
All DBs
Position
complement(3350897..3354496)
Genome browser
AA seq
1199 aa
AA seq
DB search
MVSATLLALAAPAWLIYSEVMNKKPRFIHLRSHSEYSLLEGALRLKKLPDLCRKAGMPAL
ALTDKNNMFAALEYSVAMSGAGLQPILGCQVDVAYVEARPGERPRMPAPVVLLAQSETGY
ENLMKLNSCLYIDKGGALPQVTLDQLETYAADVICLTGGAGGPVGILLQTGQKPAAQALM
ERLKAAFADRLYVELQRHPGEDGQPEAERLTERGFVEMAYAMDLPLVATNDVYFPKTDMY
EAHDALICIAEGAYVDQQDARRKLTPQHYFKSQSEMVTLFADLPEAIENTVEIARRCAFQ
AYRRDPILPKFADNEIEELRAQSHAGLKDRLAVIPHATSVEEYEKRLDFELGIIEGMGFP
GYFLIVADFIKWAKDNDIPVGPGRGSGAGSLVAYSLTITDLDPLRYNLLFERFLNPERVS
MPDFDIDFCMDRREEVIKYVQDKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDR
LSKMIPVEGVKPVSIEKALADEPRLREEARNEEVVDRLLKYGQQVEGLLRNASTHAAGVV
IGDRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKANG
RHLHIAADGTELFAPPDGLEDDIGTIPLDDEASYKLYAAAKTVAVFQVESSGMMDALKRM
RPTCIEDIVALVALYRPGPMENIPTYCEVKNGLRELESIHPLIDDILKETQGIIVYQEQV
MQIAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAIANGVDKKKAREVFDLLEK
FANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDLHLTDKLAVYFEEVRKRLEL
PWVPPCVNRSGATFKVVDGALVYALGALKNVGIEAMKLITEGRRGDARTDKPFTTLFDLA
RRVDLKRVGKRPLEMLARSGAFDALDPNRRRVFGALDSLVAYSAAIHEQKSSKQVSLFGD
AGEDLPEPRLQPVDDWLPAERLSEEFKAVGFYLSGHPLDDYMGPLKRKMAYDRGVPFMTL
DDLTEKVTNSGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLFSDTLEAAR
DHLETGSKVIVTVEATMESDQLKLLGRSVAPADAMAADAGGMGLKVFIDAPEAISAVASV
LEGAANAMKKAGKSPVELCLMHPGLPGEVEVALGQNFVVNPQIKGAIKSLSGVLEVEDL
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggtgtccgcgaccctgttggcgctggcagcccccgcttggctgatctactctgaggtc
atgaataaaaaacccagattcattcacctgcgcagccattccgaatattcccttctggaa
ggcgcgctccgtctcaagaaactgcccgatctgtgccgcaaagcgggcatgccggcactg
gccctgaccgataagaacaacatgttcgccgcgctggaatattccgtggccatgtcgggt
gccgggttgcaaccgatattgggctgtcaggtcgatgtcgcctatgttgaggcgcgcccc
ggcgagcggccccggatgcctgcgccggtcgtgttgttggcgcaatctgagaccggttac
gaaaacctgatgaaactgaattcctgcctttacatcgataaaggcggggctttgccgcag
gtcactctggatcaactcgagacctacgcggcggatgtgatttgtttgaccgggggggct
ggtggacccgtgggcatactactgcaaaccgggcaaaaaccagcggcgcaggccttgatg
gagcgcctgaaagcagcttttgcggaccgtctgtatgtcgaattgcaacgtcatccgggc
gaggatggtcagcccgaagccgagcgtctgacagagcgggggttcgttgaaatggcctat
gcgatggacctgccgctggtcgcgacaaatgatgtctatttcccgaaaacggatatgtac
gaggcgcatgacgcgctgatctgtatcgccgaaggggcctatgtcgatcagcaggacgcg
cgccgcaaactgacgccgcagcattacttcaagtcacagtccgagatggtgacgctgttt
gcggacctgcccgaagcgatcgaaaataccgttgaaattgcccgccgctgtgcgtttcag
gcctatcgccgcgacccgatcctgcccaaattcgctgataacgagattgaggaattgcgc
gcgcaatcccacgccggtctcaaggaccgcctggccgtgatccctcatgccaccagcgtt
gaggaatatgagaaacggctggattttgagcttggcatcattgaggggatgggctttccc
ggctatttcctgatcgttgccgatttcatcaaatgggccaaggataacgacatccccgtc
gggccggggcgcgggtccggggcggggtcgttggtggcctattcgctgaccatcaccgac
cttgatccgctgcgctataatctgctctttgaacgcttcctgaacccggaacgcgtgtcg
atgccggactttgacatcgacttctgtatggatcgccgcgaagaggtcataaagtacgtt
caggataaatatggccgcgacaaagtggggcaaatcatcacttttggtgcgcttttgtca
aaggccgcggtgcgcgatatcgggcgtgttctacaaatgccctatggtcaggtggaccgt
ttgtccaagatgatcccggtggagggcgtcaaacccgtctccattgaaaaggcgctggcg
gatgagccgcgcctgcgcgaggaggcccgcaatgaggaggttgtcgatcgcctgctgaaa
tacggccaacaggttgaagggctgctgcgcaacgcctccacccatgcggcgggggtggtg
atcggggaccgtcctttggacgcgctggtcccgctctatcaggatccgcgctcggacatg
cccgccacccagttcaacatgaaatgggtggaacaggcagggctggtcaagttcgacttt
cttggtctgaaaaccctgacggtcattcagaacgccgtggatcagatcaaggcgaacggg
cgacatctgcacatcgcggcggatggcaccgaactctttgcgccgcccgacggtttggaa
gacgacatcggcaccattcctctggatgatgaggcctcctacaaactctatgcggcggcg
aaaaccgtggcggtgtttcaggtggaaagttccggcatgatggatgccctgaagcgcatg
aggccgacctgtatcgaggacatcgtggcccttgtcgcgctctatcgccccggcccgatg
gaaaacatcccgacctattgcgaggtcaagaacgggctgcgcgagctggaatccatccat
ccgttgatcgacgatatcctcaaggaaacccaaggcatcatcgtctatcaggaacaggtg
atgcagatcgcgcaggtcatggcgggctatagcctcggcggtgcggatctgttgcgccgc
gccatgggcaaaaagatcgccgaggaaatggccaaggagcgcccgaaattcgaaaagggc
gccatcgccaacggtgtcgacaagaaaaaggcgcgcgaggttttcgaccttctggagaaa
ttcgccaactacggtttcaacaaatcccacgcggcggcctatgcggtggtcagctatcaa
accgcctggctcaaggcgaaccatccggtggaattcatggccggtgtgatgaattgcgat
ctccatctgaccgacaagctggccgtctattttgaggaagtgcgcaagcggttggagttg
ccctgggtgccgccctgcgttaaccggtcaggtgccacgttcaaggtggtcgacggggcg
ttggtttacgcgctgggggcgttgaaaaacgtcgggatcgaggcgatgaagctgatcacc
gaagggcgtcgcggggacgcgcgcactgacaaacccttcaccacgctgttcgatctggcc
cggcgcgttgacctcaaacgtgtcggcaaacgcccgctggaaatgctggcgcgctcgggt
gcctttgacgcgttggatccgaaccgtcgccgggtgtttggcgcgctcgattcgctggtg
gcttattccgccgcgatccacgagcaaaaatcctccaaacaggtgtcgctctttggcgat
gctggtgaagacctgcccgaaccgcgcttgcagcctgtcgatgattggcttcccgccgaa
cgcctcagcgaggaattcaaagccgtcgggttttacctctccgggcatccgctggatgac
tatatgggcccgctcaaacgcaagatggcctatgatcgcggcgtgcctttcatgacgctg
gatgatctgaccgaaaaagttaccaacagcggcgcgatgaacgcgcgcctcgccggcatc
gtcgcgggccgtcaggagcgcaaatccgcgcgtggcaatcggtttgccttcgcgcagatg
tctgatccgaccggtgcctatgaggtgacgctgttttcggatacgctggaggctgcgcgc
gatcatctggagaccggttccaaggtcatcgtcacggttgaggcgacgatggaatcggac
caattgaaactgctgggccgctcggtggcacccgcggatgcgatggcggcggatgcgggt
ggcatggggctgaaggtgttcatcgacgcgcctgaggcgatttccgccgttgccagcgtc
ctcgaaggggcggcgaatgcgatgaaaaaggccggtaaaagccccgtcgagctttgcctg
atgcaccccggccttcccggagaggtcgaagtggcgctggggcagaatttcgtcgtcaac
ccacagatcaagggcgcgatcaaatcgctgagcggggtgctggaggtcgaggacctctag
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