Roseobacter fucihabitans: ROLI_043260
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Entry
ROLI_043260 CDS
T10342
Symbol
rnd_2
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rfu Roseobacter fucihabitans
Brite
KEGG Orthology (KO) [BR:
rfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rfu03016
]
ROLI_043260 (rnd_2)
Enzymes [BR:
rfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ROLI_043260 (rnd_2)
Transfer RNA biogenesis [BR:
rfu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ROLI_043260 (rnd_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WVX51225
UniProt:
A0ABZ2C0V3
LinkDB
All DBs
Position
complement(4326198..4326812)
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AA seq
204 aa
AA seq
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MIHQVYKNDLPDGLDLGPVVAIDCETMGLNPHRDRLCLVQLSGGDGKAHLVQIAKGQTQA
PNLCALLENPEVLKLFHFGRFDIAAMLNAFGATTAPVYCTKIASRLVRTYTDRHGLAKLL
QELLHIDISKQQQSSDWGAETLSDAQIDYAASDVLYLHQLRDALNVMLEREDRMEIAQAC
FDFLPMRARLDLTGWPDTDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgatacatcaagtttacaagaatgatcttccagatggtctcgatctcgggcctgtggtg
gcaatcgactgcgaaaccatgggcctgaacccgcaccgagatcggctgtgcctggtgcaa
ctgtccgggggcgatggcaaggcacatctggtgcaaatcgccaaaggccagacgcaggct
cccaacctctgcgcgctgctggaaaaccccgaggtgctcaagctgttccactttgggcgc
tttgatatcgcagcgatgctgaatgccttcggcgcaacaacggcacccgtctattgcacc
aaaatcgccagccgcctggtgcgcacctatacagaccggcatggtttggcaaagctgttg
caggagttgctgcacatcgacatttcgaaacaacagcaatccagcgactggggtgcggag
acgctcagcgatgcacagatcgactatgcggcctccgatgtcttatatctgcaccaactg
cgtgacgcactgaatgtcatgctggaacgcgaagaccgcatggaaatcgcgcaggcctgt
tttgattttctgccaatgcgcgcccgccttgatctgaccggttggcccgatacggacatc
tttgcacactcatga
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