KEGG   Pseudorhizobium flavum: RFYW14_00389
Entry
RFYW14_00389      CDS       T07144                                 
Name
(GenBank) DNA ligase-associated DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
rfv  Pseudorhizobium flavum
Brite
KEGG Orthology (KO) [BR:rfv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rfv03400]
    RFYW14_00389
Enzymes [BR:rfv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RFYW14_00389
    5.6.2.6  RNA 3'-5' helicase
     RFYW14_00389
DNA repair and recombination proteins [BR:rfv03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    RFYW14_00389
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD Helicase_C ResIII Cas3-like_C_2 PSD4 QSregVF_b
Other DBs
NCBI-ProteinID: CAD6596784
LinkDB
Position
1:384880..387465
AA seq 861 aa
MISWSWSRGFFSRWQRLSSSAVDLVETPSAGRDAVTLPRPFLKWFAEKGWSPRAHQLELL
ARAQAGENMLLIAPTGAGKTLAGFLPSLTDLTNRGKIPPGSAFTGIHTLYISPLKALAVD
IERNLMKPVSEMGLPVTIENRTGDTPQAKRQRQKLTPPDILLTTPEQVALLLANKEAERF
FKDLKYVVLDELHSLVTSKRGHLLSLGLARIRRHAPQMQTIGLSATVADPMDLQRWLVPQ
GERPSSPAGLVHVQGGAAPDIAILGTDKRIPWSGHVSTYAIPEVYEEIKRHKTTLIFVNT
RFQAELLFQELWTINEDNLPIALHHGSLDAGQRRRVEAAMAANKLRAVVATSTLDLGLDW
GDVDLVVHVGAPKGASRLAQRIGRSNHRMDEPSKAILVPANRFEVMECQAALDANYLGAQ
DTPPVGEGALDVLPQHILGMACAEPFDPLELYEEITSASPYASLSWEMFERAVDFVATGG
YALRSYERYAKIRKTQEGRWRVSNPQVAQQYRLNLGTIVEATELNVRLVKRNAKGTLGRG
GLSLGKVEEYFLEQLVQGDTFLFAGKVLRFEGIRENECLVSNAFSMDPKIPAYAGGKFPL
STYLADQVRGMLADPARWKVLPDQVREWLEIQQDRSMLPSKDELLIETFPRGKRFFIIAY
CFEGRLAHQTLGMLLTRRLERLGARPLGFVATDYSLAVWALNDIGGMIDDGRISLTDLFD
EDMLGDDLEAWLDESYMLKRTFRNCAVISGLIERRHPGKEKTGRQVTVSTDLIYDVLRSH
EPDHILLEATRRDAASGLLDIGRLGDMLARIKGHITHRDLDHVSPLAVPIMLEIGRESVP
GEAQDAVLQEAAEELIAEALS
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgatatcttggtcgtggtcaaggggcttcttttcgcggtggcagcgcttatcttctagc
gccgtggaccttgtcgaaaccccatccgccggccgtgacgccgtaactctgccccggcct
ttcctgaaatggttcgccgagaagggctggtcaccgcgtgcgcatcagctcgagcttttg
gcgagggcgcaggccggcgagaacatgctgctgatcgcgcccaccggcgccgggaagacg
ctcgctggctttctaccgtcgctcacggatctcacgaaccgtggcaagatcccgcccggc
tccgccttcaccggcatccacacgctctacatttcgcccctgaaggcgctggcggtcgat
atcgaacgcaacctgatgaagcccgtctcggagatgggcctgccggtcaccatcgaaaac
cgtacgggtgatacgcctcaggccaagcggcagcgccagaagctgaccccgcccgacatc
cttctgacgacgccggaacaggtcgcgctgctgcttgccaacaaggaagccgagcgcttc
ttcaaggacctgaaatacgtggtcctcgacgagctgcattcgctggtgacgtcgaagcgc
ggccatctgctgtcgctcgggctcgcccgcatccgccggcatgcgccgcagatgcagacg
atcggtctctcggcgaccgtcgccgatccgatggacctgcagcgctggctggtgccgcag
ggggaacgcccttcgtcgccggccggtctcgtgcacgtccagggcggtgcagccccggac
atcgcgatcctcggcaccgacaagcgtatcccctggtccggccatgtctccacctatgcc
attcccgaggtctacgaggagatcaagcgccataagacgacgctgatcttcgtcaacacc
cgcttccaggcggaactcctgttccaggagctctggacgatcaacgaggacaacctgccg
atcgcgctgcatcatggctcgctggacgcgggccagcgtcgtcgggtcgaagctgccatg
gccgccaacaagttgcgcgccgtggtggcgacctccacgctggatctcggcctggactgg
ggtgatgtcgatctcgtcgtccatgtcggtgcgccgaagggtgcgtcccgccttgcgcag
cgcatcggccgatccaatcaccggatggacgaaccgtcgaaggcaatcctcgtgccggcc
aaccgcttcgaggtgatggagtgccaggcggcgctggatgccaattatctcggcgctcag
gataccccgccggtgggggagggtgccctcgacgtgctcccccagcatatcctcggcatg
gcctgcgccgagcccttcgatccgctggagctctacgaggagatcacctcggcctcgcct
tacgcaagtctctcctgggagatgttcgaacgcgcggtcgatttcgttgcgaccggtggc
tacgcgctccgctcctacgagcgctatgccaagatccgcaagacgcaggaaggacgctgg
cgtgtctccaatccgcaggttgcccagcagtatcggctgaacctcggcacgatcgtcgaa
gcgaccgaactcaatgtccgactggtgaagcgcaacgccaagggcacgctcggccgcggc
ggcctgtcgctcggcaaggtcgaggagtatttcctggagcagctcgtacagggcgacacc
ttcctcttcgccggcaaggtgctgcgcttcgagggcattcgcgagaacgagtgcctcgtc
tccaatgccttttccatggacccgaagatccccgcctatgcaggcggcaagttcccgctc
tccacctatctcgccgaccaggtgcgcggcatgctggcagatccggcgcgctggaaagtc
ctgcccgaccaggtgcgtgagtggctggagattcagcaggaccgctcaatgctgccgagc
aaggatgaactgctgatcgaaacctttccgcgtggcaagcgcttcttcataatcgcctat
tgctttgagggcagacttgcccaccagacgctcggaatgttgctcacacgtcggctggaa
cgcctcggcgcccgcccgctcggttttgtcgcgaccgactattccctcgccgtctgggcg
ctgaacgacatcggcggcatgatcgacgacggccgcatcagcctcaccgacctcttcgac
gaggacatgctgggcgacgatctggaggcatggctcgacgagagctacatgctcaagcgc
accttccgcaattgcgccgtgatctccggcttgatcgagcggcgtcacccggggaaggaa
aagacgggccggcaggtgacggtatccaccgacctcatttacgacgtgctgcgcagccat
gagccggatcatatcctgctcgaagcgacgcggcgggatgcggcatccggtcttttggac
atcggccggcttggcgatatgctggcgcgaatcaaggggcacatcacccatcgcgatctc
gaccacgtctcgccgctcgccgttcccatcatgctggagatcgggcgagagtcggttccg
ggagaggcgcaagatgcggtgctgcaggaagccgccgaggaactgattgcggaggcgctt
tcctga

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