Pseudorhizobium flavum: RFYW14_01467
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Entry
RFYW14_01467 CDS
T07144
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rfv
Pseudorhizobium flavum
Brite
KEGG Orthology (KO) [BR:
rfv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfv03032
]
RFYW14_01467
03400 DNA repair and recombination proteins [BR:
rfv03400
]
RFYW14_01467
Enzymes [BR:
rfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RFYW14_01467
DNA replication proteins [BR:
rfv03032
]
Prokaryotic type
DNA Topoisomerases
RFYW14_01467
DNA repair and recombination proteins [BR:
rfv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RFYW14_01467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
CAD6603782
LinkDB
All DBs
Position
1:complement(1460798..1463455)
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AA seq
885 aa
AA seq
DB search
MNVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASQK
RIKDIADAVKGSDGLFLATDPDREGEAISWHVLDLLKKRRVLGDKPVKRVVFNAITKKAV
LDAMAAPRDIDAPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
EAEIERFVSEEYWNISALLSTPRGDQFEARLVSADGKRLQNRSIKTGDDAHRLKTLLEGA
SYVVESVEAKPVKRNPGPPFTTSTLQQAASSNLGFNASRTMQVAQKLYEGVDIGGETVGL
ITYMRTDGVQMAPEAIDGARRAVQEQFGDRYVPEKPRFYSTKAKNAQEAHEAIRPTDFNR
TPEKVRRHLDADQARLYELIWKRGIASQMASAEIERTTVEILADSKGEKAGLRAVGSVIR
FDGFLGAYMDQREEGDKGEDDDEDGRLPEINAREKLDKNKVNASQHFTEPPPRYSEASLI
KKMEELGIGRPSTYAATLKTLSDREYVTTEKRKLIPQPKGRLVTAFLENFFTKYVEYDFT
ADLEEKLDRISAGELDWKQVLRDFWQDFFAQIEDTKELRVTNVLDALNEALAPLVFPKRE
DGSDPRTCQVCGTGKLSLKLGKYGAFVGCSNYPECNFTRQLSQEGAEAEASGLNEPKSLG
ADPHTGEELTLRSGRFGPYIQRGEGKDAKRSSLPKGWKPEDIDHEKALALINLPRDIGKH
PESGKMISAGLGRYGPFLLHDGTYANLESVEDVFTIGLNRAVTVLAEKQSKGPGGRGRGT
PAALKTLGDHPDGGAITVRDGRYGPYVNWGKVNATLPKGKDPQAVTLDEALALIAEKGGK
AGSGKAKATKAKAAAGTKKTAAKPKAAAKPKASAKTATKAKKTGT
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttgtcgtcgtcgaatctccggccaaggccaagaccatcaacaagtatctcggg
cccggctacaaggttctcgcatcctttggtcatgttcgcgatcttcccgccaaggacgga
tcggttcttccagaccaggacttcgagatgtcatgggaggtcgacagcgcgtcacagaag
cgcatcaaggacattgccgacgcggttaagggatccgacggcctgttcctcgcgaccgac
cctgatcgggaaggcgaggcgatttcctggcacgttctcgatcttctcaagaagaggcgc
gtgctgggggacaagcccgtcaagcgcgtcgtcttcaacgccatcaccaagaaggcggtc
cttgacgccatggccgcgccgcgggatatcgatgccccgctggtggacgcctatctcgcc
cgccgcgccctcgactaccttgtcggcttcaacctgtcgccggtcctttggcgcaagctg
cctggcgcccgctcggcgggccgggtgcaatccgtcgccctccgcctcgtctgcgaccgc
gaagccgaaatcgaacgcttcgtttcggaagagtactggaatatctccgcactgctcagc
accccgcggggcgatcagttcgaggctcgactggtctccgccgacggcaagcggctgcag
aaccgctcgatcaagaccggagacgacgcccatcgcctcaagaccctgctcgaaggcgcg
agctacgtggtcgagagcgttgaggcaaagccggtcaagcgcaatccaggtccgcccttc
acgacatccacactgcagcaggccgcctcctccaatctcggcttcaatgcctcgcgaacg
atgcaggtggcacagaagctctatgagggcgtagacatcggcggcgagacggtcggtctc
attacctatatgcgtaccgacggcgtacagatggcaccggaggcgatcgacggcgcgcgg
cgcgctgtccaggagcagtttggcgatcgctacgtcccggagaagccccgcttctattcc
accaaggcgaagaacgcccaggaagctcacgaagcgatccgacccactgacttcaaccgc
accccggagaaggtgcgtcgccacctcgacgcggaccaggcgcgtctctacgagctgatc
tggaagcgcggcattgccagccagatggcatctgccgagattgagcgaacaacggtcgaa
atcctggcggatagcaagggtgagaaagccggtctgcgcgcggtcggctcggtcatccgg
ttcgacggcttcctcggggcctacatggatcagcgcgaagagggcgacaaaggcgaggac
gacgacgaggacggccgcctgccggagatcaacgcccgcgaaaaactcgacaagaacaag
gtgaatgcaagccagcatttcacggagccgccgccgcgctactcggaagcgtcgctgatc
aagaagatggaagaactcggcatcggccgcccatccacctacgcagccacgctgaagaca
ctgagcgaccgggaatatgtgacaacggagaagcgcaagctcatcccgcagcccaaaggc
cgattggtgacggcattcctggagaacttcttcaccaagtatgtcgagtacgatttcaca
gcagatctggaggaaaagctcgatcggatttcggccggcgaactcgactggaagcaagtt
ttgcgggatttctggcaggacttctttgcccagatcgaggacacgaaggaactgcgcgtc
accaatgtgctcgatgcgctgaacgaggcgcttgcaccgctggtgtttccgaagcgggag
gacggcagcgacccgcggacctgccaggtctgcggcaccgggaaactctcactgaagctc
ggcaagtacggtgcgttcgtcggttgttccaactatcccgaatgcaactttacgcgccag
ctttcgcaggagggcgccgaagcagaagcgagcggcctcaacgagccgaagtcactcggc
gccgacccgcataccggtgaagaactgacgcttcgctcggggcggttcgggccctatatc
cagcgtggtgaaggcaaggatgccaaacgttcgtcgctgccgaagggctggaagccggag
gatatcgaccacgaaaaggcactcgcgctcatcaatcttccacgcgacatcggcaagcac
cccgaaagcggcaagatgatctccgccggccttggtcgctatggtccattccttctacat
gacggcacctatgccaatcttgaaagcgtcgaagacgtgttcacgatcggcctcaaccgg
gccgtgacggtcctggcagagaagcagagcaaggggcctggcggccgcgggcgcggaacg
ccggcggccttgaagacgttgggagatcaccccgacggcggcgccattaccgttcgcgac
ggccgctatggtccctatgtgaactggggcaaggtcaacgccacgctgccgaagggcaag
gatccgcaggcggtgacgctggacgaagctctggcactgatcgccgagaagggtggcaag
gcgggctccggcaaggccaaagccaccaaggcaaaggcggcagcgggaacgaagaagacg
gccgccaaaccaaaagctgcagccaagccgaaggcctcggcaaagacggctacgaaggcg
aagaagaccggaacgtga
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