Pseudorhizobium flavum: RFYW14_01498
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Entry
RFYW14_01498 CDS
T07144
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rfv
Pseudorhizobium flavum
Pathway
rfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RFYW14_01498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfv03019
]
RFYW14_01498
03009 Ribosome biogenesis [BR:
rfv03009
]
RFYW14_01498
Enzymes [BR:
rfv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RFYW14_01498
Messenger RNA biogenesis [BR:
rfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RFYW14_01498
Ribosome biogenesis [BR:
rfv03009
]
Prokaryotic type
rRNA processing factors
RFYW14_01498
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAD6603904
LinkDB
All DBs
Position
1:complement(1487468..1490281)
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AA seq
937 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALMQAEEEEQKKIAEDEAGDPAEAPQPQADDAT
LDTSQSEAGSEAAEASPGEEVAAEKPKAKPRRSRSRKKTAEAEASEVAERSEGTDEDKDT
PTEMAAMVETDSISEDVRGRRHSDDDDSDDGEKEEIESVGAEDAMEEVPDRVVRKPRKQY
RIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPQD
RKRLKEIARELEVPQGMGVIVRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLV
YEEGSLIKRSIRDLYNKDISEIVVAGEEGYREAKDFMKMLMPSHAKVVQPYRDLHPIFSR
SGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVAIDVNSGRSTREHSIEETALQTNLEAAE
EVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKDCLKNDRARIQVGRISHFGLLEMS
RQRIRASVLESTTQICTHCGGTGHVRSQSSVALHVLRGVEEHLLKNTTHDITVRTTPETA
LYLLNQKRNTVVDYEKRFGVSIYIESDEGIGSSHFAIDRGEPVENPVRIESLMQFAAFPV
EEDDDDIVIEEDQEDEEAGNANAAPATASSAQGEEQNGRKRKRRRRRRGGKGGDRQEGVA
ASEADDSDSDAEEGSDADDSEAGTEASEGAEGDENGRRKRRRRGKRGGRRNRPEDGMETS
ASDEADDSGDESGAEDEAVPEVVATEISTGETEAAETTAATEAVEEVPAPAKPRRSRKKA
VTAEVTPAEADLEIVAEAAEPVAEANIAPQVDAALGEEASQADAPSEEEQKPARANRASN
ISSSDPVVKSSEPAGDESDGEPPKPKKAGWWQRRGFF
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgctcatcgacgcgtctcacgaagaggagacgcgggtagtcgtcgtt
cgcggcaaccgtatcgaagaattcgatttcgaatcccaacacaagaaacagatccgcggc
aacatctatctggcaaaggtgacgagggttgagccctcgcttcaagccgcgttcgtcgat
tatggcggcaaccgccacggcttcctggctttcgccgaaatccatcccgactattaccag
atccctctcgccgaccgccaggcgctgatgcaggccgaggaagaggaacagaagaagatc
gccgaagacgaggcgggcgacccggcagaagccccgcagccgcaggcggacgatgcgacg
cttgacacttcgcaaagcgaagccggctccgaggctgccgaggccagccccggcgaagag
gtggccgccgaaaagccgaaggccaaaccgcgccgcagccgctcgcgcaagaagacggcg
gaagccgaagcatccgaggttgcagagcgcagcgaaggcacagacgaggacaaggacacg
ccgactgaaatggcggcgatggtcgaaaccgattcgatctccgaagacgtccgcggtcgc
cgtcactccgacgatgacgacagcgatgatggcgagaaggaagaaatcgaatcggtcggc
gccgaagatgcgatggaagaggttcccgatcgcgtcgtccgtaagccccgcaaacaatac
cgcatccaggaagtcatcaagcgccgccagatcctgctggtacaggttgccaaggaagag
cgcggcaacaagggcgcggccctgacgacctatctctcgcttgccggccgctattcggtg
ctgatgccgaacaccgcgcgcggcgggggcatttcccgcaaaatcacccagccgcaggac
cgcaagcgcctgaaggaaattgcccgcgaactggaagtgccgcagggcatgggcgtgatc
gtccgcaccgccggcgccaaccgcacccgtgtcgaaatcaagcgagattttgagtacctg
atgcgcctgtgggagaatgtccggacgctgacgctcaactccaccgcgccgtgcctcgtc
tacgaggaaggctcgctcatcaagcggtcgatccgcgacctctacaacaaggacatctcg
gaaatcgtcgttgccggcgaagaaggctatcgtgaagccaaggacttcatgaagatgctg
atgccgagccacgccaaggtggtccagccttaccgcgacctgcatcctatcttctcgcgc
tcgggcatcgaagcgcagctcgaccgaatgttgcagccacaggtgacgctgaagtccggc
ggctacctgatcatgaaccagaccgaggcgctcgtcgccatcgacgtcaactccgggcgc
tcgacccgagagcactccatcgaggaaaccgccctccagacgaacttggaggcggccgag
gaagtcgcacgccagcttcgcctgcgcgaccttgccggtctgatcgtcattgacttcatc
gacatggaagaaaagcgcaacaaccgcgctgtcgagaagaagctcaaggactgcctgaag
aacgaccgcgcccgcatccaggtgggccgcatctcgcatttcggcctgctcgaaatgtcg
cgccagcgcattcgtgccagcgtgttggaatcgaccacgcagatctgcacgcactgcggc
ggcactggccatgttcggtcccagtcgtcggttgcgcttcatgtactgcgcggcgtcgag
gagcacctgctcaagaatacgactcacgacatcacggtgcgcaccacgccggagactgcg
ctctatcttctcaaccagaagcgcaacaccgtcgtggattacgagaagcgttttggcgtg
tcgatttacatcgagtccgatgagggaatcggctccagccacttcgccatcgaccgcggc
gagccggtggagaaccccgtcaggatcgaaagcctgatgcagttcgccgccttccccgtg
gaggaggacgatgacgacatcgtcatcgaggaggatcaagaagacgaagaggcgggtaat
gccaacgctgccccggctacggcttcctcggcccagggcgaagagcagaacggccgcaag
cgcaagcgtcggcgtcgccggcgcggcggcaagggcggagaccgccaggaaggcgtagcc
gcttcagaggccgacgacagcgattcggacgccgaagaaggcagcgatgcggatgattcc
gaagccggcaccgaagcctccgagggtgcggaaggtgatgaaaacggacgccgcaagcgc
cgccgccggggcaagcgcggtggtcggcgcaatcggccggaggacgggatggagacatcc
gcatccgacgaggccgatgactcgggcgatgagtccggcgccgaggacgaggcagttcct
gaggtagtcgcgacggaaatctcgaccggtgagacggaggctgctgaaaccaccgctgca
accgaggcggtggaggaagtacctgctcccgccaagccccgccggagtcggaaaaaggca
gtgactgctgaagtcacgcccgccgaagccgaccttgagatcgttgccgaggccgcagag
cccgtagccgaagcgaacattgccccccaggtcgatgccgctcttggcgaggaagcttcg
caagctgatgctccgtcggaagaagaacagaagcctgcacgtgccaatcgggcgtccaac
atcagttcatcggaccccgtggtgaagagctcggagcctgccggtgatgaatcggacggt
gagccgccgaagccgaagaaggccggctggtggcagcgacgcggtttcttctga
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