Pseudorhizobium flavum: RFYW14_01530
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Entry
RFYW14_01530 CDS
T07144
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rfv
Pseudorhizobium flavum
Pathway
rfv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rfv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RFYW14_01530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfv03021
]
RFYW14_01530
03400 DNA repair and recombination proteins [BR:
rfv03400
]
RFYW14_01530
Enzymes [BR:
rfv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RFYW14_01530
Transcription machinery [BR:
rfv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RFYW14_01530
DNA repair and recombination proteins [BR:
rfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RFYW14_01530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
CAD6604043
LinkDB
All DBs
Position
1:1520615..1524823
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLDKIAGDLRSELADTTSDLKQKKLMKRLKIVENFIESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIQNQNEPGEGMAFSDMGELHHALE
NKVVTLHAKIKGRFKTVDENGKPVSKIYETTPGRMIIGELLPKNPNVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFTNACKAGISFGKDDMIIPETKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEDMMARIKAVEFDPETNRQKPMNAIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNMVDCGTERGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEVQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
ILRNSEGVLVAMGRNMAITILDERGVERSSQRVAYGSKLFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVQFEDVVDSISVSESTDESTGITKRQVIDWRSTPRGTDLKPAIVIKDASG
NIMKLARGGEARFMLSVDAILSVEPGQKVSQGDVLARVPMESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELDDVNDQLVEEGKKPASGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK
SSGASAATPMLQELSGENTPAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaacccgcaggtgccggcacagcacttcgattcg
atccgtatctcgatcgcgagccccgagaagattctctcctggtcctacggcgaaatcaaa
aagccggagaccatcaactaccgtacgttcaagcccgagcgcgacggtctcttctgcgcg
cgcatctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgtcgc
gagcgcatgggccatatcgagctcgccgctccggttgcccatatctggttcctgaagtct
cttccgtcgcgcatctcgacgctgctcgacatgacgctgaaggacgtcgagcgcgttctc
tatttcgagaactacatcgtgacggagccgggcctgacgtctctgaaggagaaccagctt
ctttccgaagaggagtacatgatcgccgtcgacgagttcggcgaagatcagttcaccgcc
atgatcggtgccgaggcaatctacgagatgctcgcctccatgaacctcgacaagatcgcc
ggtgatctgcgctccgagcttgccgacaccacgtcggatctgaagcagaagaagctgatg
aagcggctgaagatcgtcgagaacttcatcgagtccggcaatcgtccggaatggatgatc
atgaaggttgtgccggtgatcccgccggacctgcgtccgctcgttccgctcgatggcggc
cgcttcgcgacctctgatctgaacgatctctatcgtcgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgaactgcgcgccccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatctgtggacgcgctgttcgacaacggccgtcgtggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctctccgacatgctgaagggcaagcagggccgcttc
cgccagaaccttctcggcaagcgcgtcgactactccggccgttccgtcatcgtgaccggt
ccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctcttcaag
cccttcatctatgcccgtctcgacgcaaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggtcctcctgaaccgcgcaccgacgctgcaccgcctaggcatccaggccttcgaa
ccgatcctggtcgaaggcaaggcgatccagctgcacccgctcgtctgcaccgccttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaggctcagctc
gaagcccgcgtgctgatgatgtcgacgaacaacatcctgcatccggcgaacggcgccccg
atcatcgttccgtcgcaggacatggttctcggcctctattacctgtcgatccagaaccag
aacgagccgggcgaaggcatggccttctccgacatgggcgaactgcaccacgctctggaa
aacaaggtcgtcaccctgcacgccaagatcaagggccgcttcaagacggtcgacgagaac
ggcaagcctgtctcgaagatctacgagacgacccctggccgcatgatcatcggtgagctt
ctgccgaagaacccgaacgtacccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcactgcggccagaaggacacggtgatcttc
tgcgaccgcatcatgcagctcggcttcaccaatgcctgcaaggccggcatctccttcggc
aaggatgatatgatcatccctgaaaccaaggtgaagatcgtcggtgacactgaagctctg
gtgaaggaatacgagcagcagtacaacgacggcctgatcactcagggcgagaagtacaac
aaggtcgtcgacgcctggggcaaggcgaccgagaaggttgccgaagacatgatggcccgc
atcaaggctgtcgagttcgatccggaaaccaaccgccagaagccgatgaacgccatctac
atgatgtcgcactcgggtgctcgtggttctccgaaccagatgcgccagttgggcggtatg
cgtggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtgaacgagtacttcaactcgacccacggcgcccgtaagggtcta
gcagacaccgccttgaagacggcgaactcgggttacctgacccgtcgtctcgtcgacgtt
gcgcaggactgcatcgtcaacatggtcgattgcggcaccgagaggggcctcacgatgacg
gccatcgtcgatgccggccaggtcgtggcgtcgctgggagcgcgcatcctcggccgtacg
gcgcttgacgacatcgatcatccggtcacgggtgagcggatcgttgatgccggcaagatg
atcctcgagcccgatgtcatcgagatcgagaaggctggtatccagtcgatccgcatccgt
tcggcgctgacctgcgaagtccagacgggcgtctgctctgtctgctacggccgtgacctg
gcacgcggtacgccggtcaacatgggtgaggccgtcggcgttatcgctgcacagtcgatc
ggtgaaccgggcacccagctcaccatgcgtacgttccaccttggtggcacggcgaccgtg
gttgaccagtcgttcctcgaagcttcctacgagggcaccgtccagatcaagaaccgcaac
atcctccgcaattcggaaggtgttctggtggcgatgggccgtaacatggccatcaccatt
ctggacgagcgcggggttgagcgttcttcgcagcgcgtggcttatggctccaagctgttc
gtcgacgatggcgacaaggtcaagcgcggccagcgtctggccgagtgggatccttacacc
cgcccgatgatgacggaagtcgaaggcaccgttcagttcgaagacgtggtcgattcgatc
tccgtctccgaatcgaccgacgaatcgaccggcatcaccaagcgtcaggtcatcgactgg
cggtcgacgccgcgcggtaccgacctgaagcctgcgatcgtcatcaaggacgcctccggc
aacatcatgaagctcgcccgtggtggcgaagcccgcttcatgctgtcggtcgacgcgatc
ctgtccgtcgagccgggccagaaggtcagccagggtgacgtccttgcgcgtgttccgatg
gaaagcgccaagaccaaggatatcaccggtggtctgccgcgcgttgcggaactgttcgag
gctcgtcgtccgaaggatcacgccatcatcgcagagatcgatggtacgatccgcctaggc
cgcgactacaagaacaagcgtcgcgtaatgatcgagcctgccgaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccatcttcaggatggtgactacatcgag
aagggtgactacatcctcgacggcaatcctgcaccgcacgacatcctcgcgatcaagggc
gtggaagctctggcttcctacctcgtcaacgagatccaggaagtctaccgactgcagggc
gttgtcatcaacgacaagcacatcgaggtcatcgtccgtcagatgctgcagaaggtggaa
atcaccgatgcaggcgacagccagtatatcgtcggggacaatgtcgaccggattgaactg
gacgacgtcaacgaccagctggtcgaggaaggcaagaagccggcctcgggcgaacctgtc
ctgctcggcatcaccaaggcttcgctgcagacaccgtcgttcatctcggccgcatccttc
caggagaccaccaaggttctcacggaagcggcgatcgccggaaagaccgacacgctgcag
gggctgaaggagaacgtcatcgtcggccgcctgatcccggccggtacgggcggcaccatg
acccagatccgccgtatcgccacctcgcgcgacgacctcatcctcgaggagcgccgcaag
agctcgggtgcttcggccgcaacgccgatgctgcaggaactgtcgggcgagaacacgccc
gccgagtga
DBGET
integrated database retrieval system
