Pseudorhizobium flavum: RFYW14_03738
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Entry
RFYW14_03738 CDS
T07144
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rfv
Pseudorhizobium flavum
Brite
KEGG Orthology (KO) [BR:
rfv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfv03400
]
RFYW14_03738
Enzymes [BR:
rfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RFYW14_03738
DNA repair and recombination proteins [BR:
rfv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RFYW14_03738
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
NPHP3_N
DEAD
Motif
Other DBs
NCBI-ProteinID:
CAD6618834
LinkDB
All DBs
Position
1:complement(3779493..3783035)
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AA seq
1180 aa
AA seq
DB search
MNDALPRGDDPRDWLDWTATRQSLASDPASSAWVSANAGSGKTHVLTQRVIRLLLSGCRP
SSILCLTYTKAAASEMSNRVFQRLAEWVVLDDGDLRQRIASIEGAGPDALKLAEARRLFA
RALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAASALLAEARRSLLTATSA
EDDPVLAEAFAHVLDLGDEFGLENLLGEIVAHRTAIRQFLAHADRQGGVDRLLRRAFGLP
EAATEASVAESYWPLPGLSGGTLATYLQLADEKGGSKVQEVAYGLRLCQTESDVHRRVQI
LEGLFLTSVGKPKADSSLVAKKMLHAAPALASAVDLARNHVLACRDRLRVMRMARATAAA
LVLAERLNDDYEDLKKQRSLLDFEDLIARTADLLTRDGVGAWVHYKLDQGIDHILVDEAQ
DTSPVQWEVIKSLAEDFYSGSSARTTRRTIFAVGDEKQSIYSFQGAKPERFAAERTRTRA
DVEASGQIFHPVRLPLSFRSTADVLSAVDQVFSLPENARGLTFEDEAIVHRSNRIGHPGA
VDLWDVVVPEVADAGEDWTAPFDATPDKAPSAILASRIAHSIGEMIGRETIIEKGIERPI
EPGDVLVLVRKRDAFVNALTRALKRRGNIPVAGADRLRLTSHIAVQDLLSLGRFLVLPQD
DLSLSALLKSPLFNLSEEDVFEVAALRPEGSGVWQHLCRFADEQPLRFATVKEKLKQLLS
MSRQMSPHDLYARVLGQMGGRRQFLGRLGTEAGDILDEFLTFALDHEGKGLPGLQSFVST
LEIESPEIKREQDSGRNEVRIMTVHASKGLEAPIVFLVDSGSKAFISSHVPKLRLLPQDG
LEVPAWVPTKALANSLTSADDERLRQATEEEYRRLLYVGMTRAADRLIVCGYRGKNANPD
TWNSMIANALCGHPEHCSAARFSGPDGEWGGFRWRLPAGVYTATRADDAKERPDQAQSLP
AALGRALPPQVSLPRPLSPSGAGTMVEDEADDLLTASPLFGERTADGLSLQKGRLVHRML
QILPDFPAGERAEAARRYAERAARFWPSAERETLVHCVLSVLDHPDLQPVFSGHSQAEVS
IMGTLRLGGQDYAISGRIDRMAVDDEEVTVLDYKTNRKPPDREEDVPLVHRAQLALYREI
LRPLYPRHRFRCVLAYTETGGVVSLSPEILDRSLAELRPK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgccctgccccggggggacgatccgcgcgactggctggactggacggcgaca
cgacagtcgctcgcctccgaccctgcgagttccgcctgggtctcggcgaatgccggatcc
ggaaaaacgcatgtgctgacccagcgggtgatccggctgctgctttcgggatgccgcccg
tcctccatcctctgcctcacctacaccaaggctgcggcctcggagatgtcgaaccgcgtt
tttcagcggctggcggaatgggtcgtcctcgatgacggcgacctgaggcagcggatcgcc
tcgatcgagggtgccgggccggatgcgctgaagcttgcggaggcccggcgtctgtttgct
agggcgcttgagacaccgggcggcttgaagatccagacaatccatgccttctgcgaagcg
ctcctccaccagtttccgctggaggcgaatgtggccgggcatttctccgtcctggatgat
cgtgctgcctctgccctccttgccgaggcgcgtcgttcgctgctgaccgccacgtcggcg
gaagacgacccggtgctggcagaggcatttgcccatgtgcttgacctgggtgatgagttc
gggctggagaacctactcggcgagattgtcgcacaccgcacggcgatccggcagtttctc
gcccatgcagaccggcaaggaggtgtcgatcgcctcctgcggcgcgccttcggcctgcca
gaagccgcaacggaagcctccgtcgccgaaagctactggccgcttcccggcctttcggga
gggacattggccacatatctgcagcttgcggacgagaagggaggctccaaggtgcaggag
gtcgcctacggtctgcgcctctgccaaacggagagcgatgtgcatcggcgcgtccagatt
cttgagggtctgtttctcaccagcgtcggcaagccgaaggcagacagttcgctggtggcg
aagaagatgctccacgcagcgcccgcgctcgccagcgccgtcgatctcgcccgcaaccac
gttctcgcctgccgcgatcggctgcgcgtcatgcgcatggcaagggcaacggctgccgcg
ctcgtgctcgccgaacggctgaatgacgactacgaggatctgaagaagcagcgcagcctg
ctcgactttgaagaccttatagcgcgaacggcagatcttctgacccgggacggggtcggg
gcctgggtgcactacaagctcgaccaggggatcgaccacatcctcgtggatgaggcacag
gacaccagtccggtacagtgggaggtcatcaaatcgctggcggaggatttctattccggc
agcagtgcccggacgacgagacggacgatctttgccgtcggggacgagaaacagtccatc
tattccttccagggcgcaaagccggaacgattcgcggcggagcgtacccgcacacgtgcg
gatgtggaggcgagcgggcagatattccacccagtgcggctgccgctgtccttccgctcc
accgccgacgtcctgtcggcggtggatcaggtattctcgctgcccgaaaacgcacgtgga
ctgacgttcgaggacgaggctatcgtccaccgctcgaacaggattgggcatccgggtgcc
gtcgacctgtgggacgtggtggtaccggaggtggccgatgccggcgaggactggacggca
ccattcgatgcgacgcccgacaaggcgccatcggcgatcctggcgtcgcgcatcgcccat
tcgatcggagagatgattggacgcgagaccatcatcgagaagggcatcgaacgaccgatc
gagccgggagacgtgctcgtcctggtacgcaagcgcgacgccttcgtgaacgcgcttacc
cgggccctcaagcggcgcggcaacatccctgtcgccggtgccgaccgacttcgcctcacc
agtcacattgcggtccaggacctcctgtcgctcggacgtttcctggtgctgccccaggac
gacctgtcgctgtcagccctgctcaagagcccgctgttcaacctgtcggaagaagacgtt
ttcgaagtggcagcactgcggccggagggaagcggcgtctggcagcatctgtgccggttt
gcagacgagcagccgctgcggttcgcaacggtgaaagagaaactgaagcagctcctgtcg
atgtcacggcagatgagcccccacgatctctatgcccgggttctcggtcaaatggggggg
cgtcgccagttcttggggagactgggcacagaagcgggcgatatcctggacgagttcctg
actttcgccctcgatcacgaaggtaagggtctgccaggcctccagtccttcgtttcgacg
ctggagatcgaatcaccggagatcaagcgcgaacaggacagcggccgtaacgaggtgcgg
atcatgaccgtgcatgcctccaagggtctggaggcgccgatcgtcttcctagtggacagc
gggtcgaaggccttcatttcctcgcatgtgccgaaactgcgccttctgccgcaggatggg
ctggaagttccggcatgggtgccgacgaaggcgctcgcaaattccttgacgagtgccgat
gacgaacggctgaggcaggcgaccgaggaggagtatcggcggctactctatgtcggcatg
acgagagctgcagaccggctgatcgtctgcggttatcgcggcaagaatgccaatcccgac
acttggaacagcatgatcgcaaacgccctctgcggccaccccgagcattgcagcgccgct
cgtttttccggcccggacggggaatggggcggcttccgctggcgccttccggcaggggtc
tatactgccacgcgtgcggatgatgcgaaggaacgcccggatcaggctcagtctctgccg
gcggcactcggccgtgcccttccgccacaggtctcgcttccacgccccctcagcccgtcc
ggcgccggcaccatggtcgaagacgaggcagacgatcttctgacggcctcgccgcttttt
ggggaaaggaccgcagatggcttgtccctccagaagggccggctggtgcaccgcatgctc
caaattcttccggatttcccggcaggcgaacgggccgaggcggcgcggcgatatgcggag
cgggcggcacgtttctggccgtcggcggagcgcgagaccctggttcactgcgtgctttct
gtgctcgaccatccggatctccagcctgtgttttccggccacagccaggcggaggtatcg
atcatggggacgctccgcctgggcgggcaggactatgccatctcgggccgcatcgaccgg
atggcggtggatgacgaggaggttacggtcctcgactacaagacgaaccggaagccgccg
gatcgcgaagaggatgtgcccctcgtccatcgggcacagctcgccctctaccgcgagatc
ctgcggccactctatccaaggcaccgttttcgctgcgtcctcgcttatacggagacgggc
ggcgtggtgtcgctgtcgccggagatcctcgaccgttcgcttgccgagcttcggccaaag
tga
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