Pseudorhizobium flavum: RFYW14_03989
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Entry
RFYW14_03989 CDS
T07144
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
rfv
Pseudorhizobium flavum
Brite
KEGG Orthology (KO) [BR:
rfv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rfv03016
]
RFYW14_03989
Enzymes [BR:
rfv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RFYW14_03989
Transfer RNA biogenesis [BR:
rfv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RFYW14_03989
Prokaryotic type
RFYW14_03989
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GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
TruB-C_2
Zf-C2H2_ZNF451_5th
Motif
Other DBs
NCBI-ProteinID:
CAD6620540
LinkDB
All DBs
Position
1:4040081..4041013
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AA seq
310 aa
AA seq
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MSKPRKPKGRPVSGWLILDKPVDFGSTEAVSKIKWLFNAQKCGHAGTLDPLASGMLPIAL
GDATKTVPYVMDGRKVYEFTVTWGEERLTDDLEGEVTHTSDKRPTEEDIRALLPRYTGTI
SQVPPQFSAIKIAGERAYDLARDGEVVEIPSREVEIHRLTLIGCPDAHTAHFEVECGKGT
YVRALARDFGRDLGCFGHISGLRRTFVAPFGEDRMVPLADLVALEKIEDREERLASLDAY
LIDTAEALSNLPHLAVTDDQAHRLRMGNPVIVRGRDAPLAEPEAYATARGRLVAIGEIGQ
GEFRPKRVFG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcctcgcaagcccaagggccgcccggtatcgggctggctcatcctcgacaag
cccgttgacttcggttcgaccgaagccgtctccaagatcaagtggctgttcaatgcccag
aagtgcggtcatgcaggcacgctcgacccattggcgtcgggaatgctgccaattgcgctc
ggcgacgccaccaagaccgttccctatgtcatggatggtcgcaaagtctacgagtttact
gtgacctggggcgaggagcggctgacggacgacctcgaaggcgaggtcacgcacacgtcc
gacaagcggccgaccgaggaggatatccgcgccctgttgccgcgctataccggcacgatc
agccaggtgccgccgcagttctcggcaatcaagatcgccggcgaacgggcctacgacctt
gcacgcgatggggaggtggtcgaaatcccctcccgcgaggtggagatccatcgactgact
ctgattggctgccccgatgcgcatactgcccatttcgaggtcgagtgcggcaagggcacc
tatgtacgggcgctggcacgcgacttcggccgtgatctcggatgcttcggccatatctcc
ggcctgcggcgcaccttcgtcgcaccgtttggcgaagatcgcatggtgccgctcgccgac
ctcgtggcgctcgagaagatcgaggaccgggaggaacgtcttgcttcgctcgacgcctac
ctgatcgatactgccgaggcactctccaaccttccgcatcttgcggtgacggacgaccag
gcgcatcgcctgcggatgggaaatccggtgatcgttcggggacgtgatgccccgcttgcc
gagccggaggcctatgcgaccgcccggggacggctggttgcgatcggcgagatcgggcag
ggcgagttccggcccaagcgcgtcttcggctga
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