Rhizobium gallicum bv. gallicum: RGR602_CH00027
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Entry
RGR602_CH00027 CDS
T03539
Name
(GenBank) double-strand break repair helicase AddA type protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rga
Rhizobium gallicum bv. gallicum
Brite
KEGG Orthology (KO) [BR:
rga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rga03400
]
RGR602_CH00027
Enzymes [BR:
rga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGR602_CH00027
DNA repair and recombination proteins [BR:
rga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RGR602_CH00027
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
NPHP3_N
DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJD39410
UniProt:
A0A0B4WXV0
LinkDB
All DBs
Position
complement(23646..27197)
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AA seq
1183 aa
AA seq
DB search
MSDPTALPQGDDPGMWISWTTIQQSIASDPSRSAWVSANAGSGKTHVLTQRVIRLLLSGA
RPSAILCLTYTKAAASEMSNRVFARLAEWAVLPDEELKNRITQIEGETPDRLKLAEARRL
FAKALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAAATLLADARRSLLTAT
TPDQDPELADAFSYILNLGDETGLETLLGEIVASRNAIRRFISSAEQRGGIAATLRRELQ
LSADETEAQITSRYWPLPGLFGLTFDLYLTLTAQKGGAKAQEVAYGLRQASNERNATKRA
ELLEKIFLTAKGEPKSDSQFTVKAMLCDAPELADAIAEARAHVVACRDRLKIMRMFNATH
AAMILADRLNRDYDDLKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDQGIDHILVDE
AQDTSPIQWSVIQSLAEDFFSGESARPVVRTLFAVGDEKQSIYSFQGARPERFSEESERT
RRRVSASGQMFSSVRLPLSFRSTSDVLAAVDHIFTSSENARGLSAVEEPVVHRSSRIGHP
GAVDLWEMIAPEATVKDEDWTAPFDATPESAPAAILARRMAHTIERLVGHETIVDKGKER
LIRAGDILVLVRKRDAFVNALTRALKRRNNIPVAGADRLRLTSHIAVQDLLALGRFLLLP
QDDLSLAAVLKSPLFDLSEDDIFALAALRSDNASVWTHLQQFALDGHERYATVTEKLTLL
LHQSRNLSVHDFYARLLGVHGGRRQFLARLGTEVSDILDEFLTFTIDHESSGLPGLQSFI
SALELEAPEVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAFTHTHMPKLRLLET
NAETPPIPVWVPVSGLANSMTQADAARLQKLAEEEYRRLLYVAMTRAADRLIVCGYRGVR
ANSDTWHMMISSAMADSHPHVTPASFEGPDGEWQGVKWRVPQVGRTFERSEKLEDWNERE
ALPSSILRPLPPQRQLPRPLSPSGAGTIIDEQADDLLINSPLFAEKTRSDRSLEKGRLIH
RMLQTLPDIAPAERADAAARYASRAARFWPETERQRLIDSVLKLMTEDSLQAIFAVHTQP
EVSIMGTLTLKGGHYAVSGRVDRLAVFDDRVVVLDYKTNRVPPATQKDIPSAHQAQLAIY
REILAPLYPGRRIDCMLVYTENATVYTLSGRELEMALAGLKTK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatccgaccgcacttccgcaaggggacgatccgggcatgtggatcagctggacg
acgatccagcagtcgattgcctccgacccgtcgcggtcagcctgggtttcggccaatgcc
ggttccggcaagacgcatgtgctgacgcagcgcgtcatccgccttctgctttccggtgcg
cggccctcggccatcctctgcctcacttataccaaggccgccgcatccgaaatgtcgaat
cgtgtcttcgcacgtttggccgagtgggcggtgctgccggacgaggaactcaaaaaccgc
attacgcagatcgaaggcgaaacgccggatcggctcaagcttgccgaagcgagacggctt
tttgccaaggcgctggaaacgccgggcgggctgaaaatccagaccatccatgccttttgc
gaggcattactgcatcagtttccattggaggccaatgtcgccggacacttctcggttctc
gacgatcgtgccgcagcgacattgctcgccgatgcccgccgctcgctcttgaccgcgacg
acacccgaccaggatcccgagcttgccgatgccttctcctatattctcaatctcggtgac
gagaccgggttggaaacactactcggcgagatcgtcgccagccgtaacgccattcgccgc
ttcatttcctcggccgagcaacgaggcgggattgcggccacgctgcgcagggaactgcaa
ctatccgccgacgaaacagaggcccagatcacctcgcgatactggccgctgccgggtctc
ttcggcctgacgttcgatctttacctgacattgacagcccaaaagggcggcgcgaaagcg
caggaagtcgcctatggcttgcggcaggcttccaacgagcgcaatgcgactaagcgcgcc
gaattgctggaaaaaatattcctgacggcgaagggcgaacccaagtcggattcgcaattc
accgttaaagccatgctctgcgatgcacctgagcttgcagatgcgatcgctgaagcgcgc
gcgcatgtcgtcgcctgccgcgaccgcctcaagatcatgcggatgttcaatgccacgcat
gcagcgatgatcctcgctgaccggctgaaccgggactatgacgacctgaaaaagcagcgc
agtcagctggatttcgaagatctcatcacgcgcaccgcggatctgctgacgaaaagcggc
gtcgggccttggattcattataagctcgaccagggcatcgatcacattctggtcgatgaa
gcgcaggatacgagcccaatccaatggagcgtgatccagtcgctggcggaagatttcttt
tccggcgaaagtgcgcggccggtcgtgcggacgctgtttgccgtcggcgacgagaagcaa
tcgatttattccttccagggcgcgcgcccggaacgtttctccgaggagagcgaacgtacg
aggaggcgggtctcggcaagcggtcaaatgttttcgtccgtgcgcctgcccctttccttt
cgctcgacatccgacgttctcgctgcggtcgaccatatcttcacatcgtccgaaaacgcg
cgaggcctcagcgccgtcgaagaaccggtcgttcaccgatctagccgcatcggtcaccca
ggtgccgtcgatctctgggagatgatcgcccccgaagccaccgttaaggacgaagactgg
acagcgccctttgacgcgactcccgaaagcgcgccagctgctattcttgcgcggcggatg
gcccatacgatcgagcggcttgtcggccatgagacgatcgtcgacaagggcaaggagcgt
cttattcgggcgggtgatatccttgtgctcgtccgcaagcgcgatgccttcgtcaatgcc
ctgacccgcgcactgaaacggcgcaacaatattccggtcgcgggcgcagaccgcctcagg
ctgaccagccatatcgctgttcaggacttgctggcgcttggccgcttcctcttgttgccg
caggatgatctttcactggcggcggtgctcaagagcccgctgttcgacctatcggaagac
gatatcttcgcactcgctgcgctgcgtagcgacaatgcaagcgtgtggactcacctgcag
caattcgcactcgacggtcacgagcgttatgcgaccgtgacagaaaagctcacgctcctt
cttcatcaatcgcgaaacctctccgttcacgacttttacgcgcgtctgcttggcgttcac
ggcggccggcggcagtttctcgcgcgtctcggcaccgaggtcagcgatattctggacgag
ttcctcacattcacgattgatcacgaaagctcgggcttgcccggcctgcaatccttcatc
tcagcgctggaactcgaagcgcccgaagtgaagcgtgagcaggacaagggccgcaacgag
gttcggatcatgaccgtgcacgcttctaaggggctggaagcaccgatcgtttttcttgtc
gacggcggctccaaagctttcacgcatacccacatgccgaaactgcgcctgctcgaaaca
aatgcagaaacccctccaatacctgtctgggttccggtcagcggccttgccaattcgatg
acgcaagccgatgcggcacgacttcagaaattggcggaagaggaataccggcggctgctc
tatgtagcgatgacacgcgccgccgaccggttgattgtttgcggttatcgcggtgtcagg
gcaaacagcgatacttggcacatgatgatttcatcagcgatggcagacagtcacccacat
gttacaccggcaagcttcgaaggaccggatggtgaatggcagggcgtgaaatggcgcgtg
ccgcaagtgggccgcacgttcgagcgctcagagaagctggaagactggaacgagcgcgag
gccttgccctccagcattctccggccgctcccgccgcaaaggcagttgccgagacctctc
agcccatccggcgccggaaccatcatcgatgagcaggcggatgacctgttgatcaattcg
ccgctctttgcggaaaaaacacgctccgacaggtcgttggaaaaggggcgtctgatccac
cgcatgctccagactctaccggacatcgctccagccgagagagcggacgcggcggcgcgt
tacgcaagccgcgctgcacgtttctggcccgaaaccgaacggcagagattgatcgattcg
gtgctgaaactaatgacggaagacagccttcaggcgatctttgcagtgcacacgcagccg
gaagtctcgatcatggggacgctcaccttgaaggggggccactatgccgtttccggccgt
gtcgatcgcttggccgtattcgacgatcgcgtcgtcgttctcgactataaaaccaatcgc
gtgccgcccgcgacccaaaaggacattccctctgcgcatcaggcgcagcttgcgatctac
cgcgagatcctggcgccgctctatccgggcaggcgcatcgattgcatgctggtctatacc
gagaacgccactgtctatacgttgagcgggcgggagctcgaaatggcgcttgcaggactc
aaaacaaagtga
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