Rhizobium gallicum bv. gallicum: RGR602_CH01889
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Entry
RGR602_CH01889 CDS
T03539
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rga
Rhizobium gallicum bv. gallicum
Pathway
rga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGR602_CH01889 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rga03400
]
RGR602_CH01889 (mfd)
Enzymes [BR:
rga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGR602_CH01889 (mfd)
DNA repair and recombination proteins [BR:
rga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RGR602_CH01889 (mfd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJD41220
UniProt:
A0A0B4X3A7
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All DBs
Position
1868773..1872276
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AA seq
1167 aa
AA seq
DB search
MIPGIDASKLAAAAEPLTIGNVPSGLEPLLLAELARAGGPVAYVLSDGQRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLTALSGLIAHRKKPHAAIVLVTVNAMLQK
VAPQDVIESLAFSARPGNQVRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLNLNPMSEVTLTPDTISRFRKNYLSAFG
AATRDDALYLAVSEGRRYPGMEHWLPLFYEKLETVFDYLKGFRMVTDHTVREAAEERSKL
VLDYFDARLNSAQQVKGQMAQGTPYKPVTPGQLYLDSEIFSKTLDAFNSMRISPFNEHEG
EARRVVNIGARQGERWARANAEGGNAERVNIFDVVVKHIAERRAGGAKVLITAWTEGSLE
RLLQVLNEHGLERVKPVEALKAVDSLDRGEAAAAVLSLESGFEIGNLIVIGEQDILGDRM
VRRTKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFVGLKAIEAAGAPHACLELQYADDA
KLFLPVENIDLLSRYGGEGTEAQLDRLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTR
HAPALTTQEGLYDEFAARFPYDETEDQDNAIEAVRGDLAAGRPMDRLVCGDVGFGKTEVA
LRAAFIAAMNGIQVAVVVPTTLLARQHFKTFIERFRGLPVRIQQASRLVGAKELALTKKE
VAEGKTDIVVGTHALLGAGIKFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPIDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPR
LADLEDVHAFLRSDVPELKVAVAHGQMPAGELEDVMNAFYEGRYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIQDTGWS
PQISVGTPVMIPDGYVPDLHLRMALYRRLGEITELKEIDAFGAEMIDRFGPMPIEVQHLL
KIVYIKSLCRIANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIAKQGTMAKIRPDHSVFL
TRDLPTPEKRLQGAAVVMTQLAEMAKP
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatcccaggaattgatgcaagcaagctcgcagccgccgccgagccgctgacgattggc
aatgtgccgtccggcctggaaccgctcctgctcgccgaattggcacgcgctggcggaccg
gtcgcctacgtgctttccgacgggcagcgcatggccgacctggagcaaatgctcggcttt
gtcgcgcccgacattccggttcttacgctgcccgcctgggactgcctgccctacgaccgc
gtttctcccagcgccgatacctcggcccgccgcctgacggcactgagcggtctgatcgcc
catcgcaagaagccacatgcggcaatcgtgctcgttaccgtcaacgcaatgctgcagaag
gtggcgccgcaagatgtgatcgagagtctggcattctcggcgcgccccggcaaccaggtc
cgcatggacgacctcgccggccgtctggagcgcaacggcttcgatcgggtcgcgacggtg
cgcgaggtcggcgaatatgcggtgcgcggcggcatcctcgacgttttcgttccgggctcc
gaagagccggtccgtctcgatttctttggagatacgctggagagtatccgcagcttcgac
ccggcaagccaacgcacaaccgggcaggtgcgttctcttaatctcaacccgatgagcgaa
gtgacgctgacgccggatacaatcagccgcttccgcaagaattatctctcggcctttggc
gccgcgacccgcgacgacgcgctttatcttgcggtttccgaagggcgccgctatcccggc
atggagcactggctgccgctcttctacgagaagctggagactgtcttcgattacctgaag
ggttttcggatggtcacggaccataccgtgcgtgaggccgccgaggagcgctcgaagctg
gttctcgattacttcgatgcccgcctgaactcagcccagcaggtcaagggccagatggcg
cagggaacaccctataagcctgtgacgcccggtcaactttatctcgacagcgaaatcttt
tcgaagactctggatgcgttcaatagcatgcggatttcgcccttcaacgagcacgagggc
gaggcaaggcgcgtcgtcaacatcggtgcgcgccagggcgagcgctgggcgcgggcgaat
gccgaaggcggcaatgccgagcgcgtcaacatcttcgatgttgtcgtcaagcatatcgcc
gaaaggcgggcaggcggcgcgaaagttctcatcaccgcctggacggaaggttcgcttgaa
cgcctgttgcaggtgctgaacgagcatggcctggaacgcgtcaagccggtcgaagcgttg
aaggccgtcgattcgctggacaggggcgaggcagcggcagccgtgctcagcctcgagtcg
ggcttcgagatagggaatctcatcgtcatcggcgagcaggacattctcggcgaccgcatg
gttcgccgcaccaagcgccgcaagcgcgctgccgacttcatttcggaggttgcgggtctc
gacgaaggttcgatcgtcgtccacgccgaacatggcatcggccgtttcgtcggcctgaag
gcaatcgaggcggccggcgccccgcacgcctgtctagagctgcaatatgccgatgacgcc
aagctcttcctgccggtcgaaaacatcgatctcctgtcacgttatggcggtgagggaacc
gaagcccagctggacagactcggcggcggcgcatggcaaatgcgcaaggcgaaactcaag
aaacgcctgctcgacatggcggacgcgctgatccgaattgcggccgagcgtttgacccgc
cacgcgccggcgctgacgacacaggaagggctttacgacgagtttgcggcccgcttcccc
tacgatgagacagaagatcaggataatgccatcgaggccgtgcgcggcgaccttgccgct
gggcgcccgatggatcgcctcgtctgtggcgacgtcgggttcggcaagacggaagttgcg
ctgcgcgccgccttcatcgcggcgatgaacggtattcaggtcgctgtggtcgtaccgaca
acgctgcttgcgcggcagcatttcaaaaccttcatcgagcgcttccgtgggctgccggtg
cgtatccagcaggcctcgcgccttgtcggtgcgaaggaactcgctcttacgaagaaggag
gtggccgagggcaagaccgatatcgtcgtcggaacgcacgcgctgctcggcgccggcatc
aaattcgccaatctcggcctcctcatcatcgatgaggagcagcatttcggcgtgaagcac
aaggaacgcttgaaggagctgaagagcgacgtccacgtgctgaccctttcggcaacgccg
atcccgcgcacgctgcagctggcgatgaccggcgttcgcgagctgtcgctgatcacgaca
ccgccgatcgaccgcatggcggtgcgcaccttcatttcgcccttcgacagcctcgtcatc
cgcgagacgctgatgcgcgagcattatcgcggcggccagagcttctacgtctgtccgcgc
ttggcggacctcgaggacgtgcatgccttcctgcggtcggatgttcccgagctgaaggtt
gctgtcgcccatggtcagatgccggcgggcgaactcgaagacgtcatgaatgccttttac
gagggccgttacgacgtgctgctttcgacgaccatcgtcgaatccggcctcgatgttccg
acagccaacacgctcatcgtccaccgcgccgacatgttcggtctggcgcaactctaccaa
ctccgcggccgcgtcggccgctcgaaggtccgcgcctttgcgctcttcacgctgccggtc
aacaaggtgctgacggcgaccgccgagcgtcgcctcaaggtgctgcagtcgctggatacg
ctcggcgccggcttccagctcgccagccacgacctcgatatccgcggggcgggtaacctt
ctgggtgaggagcagtcgggccacatcaaggaagttggcttcgaactttaccagcagatg
ctggaagaggcggtcgctgaggtgaagggtgtggacgaaattcaggacaccggctggtcg
ccgcagatttcggtcgggacgccggtgatgatcccggacggatacgtgccggacctgcat
ctgcgcatggcgctctatcgtcgcctcggcgagatcactgagctcaaggagatcgatgcc
ttcggcgccgaaatgatcgaccgcttcggtccgatgccgatcgaggtgcagcatcttttg
aagatcgtctacatcaaatcgctttgccgcatcgccaatgtcgaaaagctggacgccggc
ccgaagggtgtggtcgtccaattccgcaacaaggaattcccgaacccggcaaacctggtc
gggtatatcgccaagcagggcacgatggcgaagatccgtccggaccacagcgtgtttttg
acccgcgacctgccgacgccggaaaagcggttgcagggcgcggccgtcgtcatgacgcag
ctggccgaaatggcaaagccgtag
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