Rhizobium gallicum bv. gallicum: RGR602_CH02600
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Entry
RGR602_CH02600 CDS
T03539
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rga
Rhizobium gallicum bv. gallicum
Pathway
rga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGR602_CH02600 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rga03019
]
RGR602_CH02600 (recQ)
03400 DNA repair and recombination proteins [BR:
rga03400
]
RGR602_CH02600 (recQ)
Enzymes [BR:
rga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGR602_CH02600 (recQ)
Messenger RNA biogenesis [BR:
rga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGR602_CH02600 (recQ)
DNA repair and recombination proteins [BR:
rga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RGR602_CH02600 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
AAA_30
GARS_N
Motif
Other DBs
NCBI-ProteinID:
AJD41922
UniProt:
A0A0B4X5X9
LinkDB
All DBs
Position
complement(2584878..2586740)
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AA seq
620 aa
AA seq
DB search
MEMDGGDMAFSAAGALFGNRQDPLVILKRVYGYPAFRGKQQQVIDQLVAGGDAVVLFPTG
AGKSLCFQIPALCRDGVGIVVSPLIALMRDQVEAMKQLGIRAAAINSSLTREEFVDVRRA
LSAGQLDLLYVTPERILMDGFRETIGSAKIALFAIDEAHCVSQWGHDFRPEYRELGRLAE
HYPGVPRIALTATADPHTRDDIIERLALNNAKVFTTSFDRPNISYEIVERNQPRQQLLRF
LSRHKGNSGIIYCLSRAKVEDTADWLNTQGIRALPYHAGMDRSLRDANQDAFLKEEELCL
VATVAFGMGIDKPNVRYVAHLDLPGSIEAYYQETGRAGRDGLPSEVWMAYGMSDAIQRRR
MIDEGNAADEIKRIERGKLNALLAICETASCRRQAILGHFGEAHAGKCGNCDTCLKPVET
WDGTEAAIKALAAVYRTGERFGTGHVIDVLLGNTNEKTERFGHVDMPVFGAGKDIPARIW
QSVFRQLLAMGLIRIDHEAYGAMKLEPDARAVFKHERQVFFRKDRPASERRTKKAERSER
RSGLSGADGILFEALRAERTSIAKSLGVPPYVVFPDTTLIAFATERPRSLKELLNISGVG
QSKLEHYGDAFLDVILANDD
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggagatggacggcggcgacatggcgttttcggccgcaggtgcgctcttcggcaaccgc
caggacccgctcgttatcctgaagcgggtctacggctatcccgcgtttcgcggcaagcaa
cagcaagtgatcgatcagctcgtggcaggcggcgatgcagtggtgctctttccgacgggc
gcaggcaaatcgctctgcttccagatcccggcgctctgccgcgacggcgtcggcatcgtc
gtttcgccgctgattgccctgatgcgcgatcaggtggaggcgatgaagcagctcggcatc
cgcgctgcagcgatcaactcgtcgctcacccgcgaggaattcgtcgatgtccgccgggca
ctgtcggcgggtcagctcgatcttctttatgtcacgccggagcggatcctcatggacggc
ttcagagagacgatcggcagtgcgaagatcgcgctctttgcgatcgacgaagcgcactgc
gtctcgcaatgggggcatgacttccgcccggaatatcgcgaactcggtaggcttgcggaa
cactatccgggcgtgccgcgcattgcattgaccgcgactgccgatccacacacccgcgac
gacatcatcgaacggctggcgctgaacaacgccaaggttttcaccaccagcttcgaccgg
ccgaacatttcctacgaaatcgtcgagcgcaatcagccgcgacagcagctcctgcggttc
ctctcgaggcacaagggcaatagcggcatcatctactgcctgtcgcgcgccaaggtcgaa
gacacagcagattggctgaacacgcagggcatccgcgcgcttccctatcatgccggcatg
gaccggtcgctgcgcgatgccaatcaggatgcgttcctgaaggaggaagaactttgcctc
gtcgccacagtcgccttcggcatgggcatcgacaagccgaatgtgcgttatgtcgcccat
ctcgacctaccgggctccatcgaggcctattaccaggaaaccggccgcgctgggcgcgac
ggcctgccgtcggaggtctggatggcctatggcatgtccgacgccatccagcgccgccgc
atgatcgacgagggcaatgcggccgacgagatcaaacgcatcgaacgcggcaagctcaac
gcgctgctcgccatctgcgaaaccgcttcctgccgccgccaggcgatccttgggcatttc
ggcgaagcgcatgccggcaagtgcggcaactgcgatacctgcctgaagcctgtcgaaacc
tgggatgggacggaagcggcgatcaaggcgcttgccgccgtctatcgcaccggcgagcgc
tttggcaccggccatgtgatcgatgtgctcctcggcaataccaacgaaaagaccgagcgc
ttcggccatgtggacatgccggtcttcggcgccggcaaggatatcccggcccgcatctgg
caatccgtcttccgccaacttcttgccatgggtctgatccgtatcgatcatgaggcctat
ggcgcgatgaagctggagccggatgcccgtgccgtcttcaagcatgaacgccaggtcttc
ttccgcaaggatcgcccggcctcggaacgccgcaccaagaaagccgaacgtagcgagcgc
cgctccggcctttccggcgccgacggcattctcttcgaagcgcttcgggccgaacgcacc
tcgatcgcgaaatccctcggcgtgccgccctatgtcgtctttcccgacacgacgctgatc
gccttcgccaccgagcggccaaggagcctgaaggagctcttaaacatctccggcgtaggg
caatcgaagcttgaacactatggcgatgcgtttctggacgtcattctggcaaacgacgac
tag
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