Rubrivivax gelatinosus: RGE_00240
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Entry
RGE_00240 CDS
T01803
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase LigT
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rge
Rubrivivax gelatinosus
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rge03016
]
RGE_00240 (ligT)
Enzymes [BR:
rge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
RGE_00240 (ligT)
Transfer RNA biogenesis [BR:
rge03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
RGE_00240 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
BAL93369
UniProt:
I0HK32
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All DBs
Position
complement(27765..28274)
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AA seq
169 aa
AA seq
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MAAEPTARLFLAVWPDAAAREALVDWQRRWQWPRGARLTAPDRLHLTLHFIGQVPTARIA
AVADGLAVAFEPFEPGFSRPALWRGGLALAMPETVPQALTALHGRLAEALQALALPVERR
PYKPHLTLARDAEGAVPPAEPLACRWTAEACTLVQSAGGYRTLRRYPAR
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgagccgacggcgcggctgtttctcgccgtctggcccgacgctgcggcgcgt
gaggcgctcgtcgactggcagcgccgctggcagtggccacgcggtgcccgcctgacggcg
cctgatcgcctgcacctgacgctgcatttcatcggccaggtgccgacggcgcgcatcgcc
gccgtcgccgacgggctggcggtggctttcgagcctttcgaaccgggtttcagccggccc
gcgctgtggcgcggcgggctcgcgctggcgatgccggagacggtgccgcaggcgctgacc
gccctgcacggccgcctggccgaggcgctgcaggccttggcgctgccggtcgagcgccgg
ccctacaagccgcatctgacgctggcgcgcgatgccgaaggcgccgtgccgccggccgag
ccgctggcctgccgttggaccgccgaggcctgcacgctggtgcagtcggccggcggctac
cgcacgctgcgccgctacccggcgcgctga
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