Rubrivivax gelatinosus: RGE_12150
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Entry
RGE_12150 CDS
T01803
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I SbcB
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RGE_12150 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_12150 (sbcB)
Enzymes [BR:
rge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
RGE_12150 (sbcB)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RGE_12150 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RGE_12150 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RGE_12150 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BAL94556
UniProt:
I0HNG9
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All DBs
Position
1260615..1262057
Genome browser
AA seq
480 aa
AA seq
DB search
MAETTFFWHDYETFGRVPRRDRPAQFAGIRTDAELNEIGAPAMWFCQPPTDALPDPESCL
LTGILPQQALAEGVAEREFASRIEAALAAPGTIGVGYNSIRFDDEVTRFLFWRNLIDPYA
REWQNGCGRWDLLDVVRCCWALRPEGIEWPKHEDGRPSFKLEHLTAANGLAHEAAHDALS
DVRATIALARLIRQRQPRLWDFCLKLRHKDAVRAEIGVGRPFLHLSGMYGVENGCMAIVW
PLAPHPTNRNELIVWDLAQDPAELASLDAETVRRRLYTKTEELAAAGETRLPIKTIHLNK
SPVVIGNLKTLGPARERWGLDLERALVHAERAAALGRTLEPLWSLVFAKPAAGAPVDVDE
DLYGGFLGDEDRRQLQRLRGLDGAALASRRPAFDDPRLDELLFRYRARNFADTLDAEERE
RWAAHRHARLIDGAGGALTLQAYAERIDELAEAAAERDDERAQSLLEALVDWAEQLAPQD
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaccaccttcttctggcacgactacgagaccttcggccgcgtgccgcggcgc
gaccggccggcgcagttcgccggcatccgcaccgacgccgaactcaacgagatcggcgcc
ccggcgatgtggttctgccagccgccgaccgacgcgctgcccgaccccgagagctgcctg
ctgaccggcatcctgccgcagcaggcgctggccgaaggcgtcgccgagcgcgagttcgcc
tctcgcatcgaggccgcgctggccgcgcccggcacgatcggcgtcggctacaacagcatc
cgcttcgacgacgaggtcacgcgctttctcttctggcgcaacctgatcgacccctacgcg
cgcgaatggcagaacggctgcggccgctgggacctgctggacgtcgtgcgctgctgctgg
gcgttgcgccccgagggcatcgagtggcccaagcacgaggacggccggccttcgttcaag
ctcgagcacctgacggcggccaacggcctggcgcatgaggccgcgcacgatgcgctgtcc
gacgtgcgcgcgacgatcgcgctggcgcggctgatccgccagcgccagccgcggctctgg
gacttctgcctgaagttgcgccacaaggacgcggtgcgcgccgagatcggcgtcggccgg
ccgttcctgcacctgtcgggcatgtacggcgtcgagaacggctgcatggccatcgtctgg
ccgctggcgccgcacccgacgaaccgcaacgagctgatcgtctgggacctggcgcaggac
ccggccgaactcgcgtcgctcgacgccgagaccgtgcgccggcgcctgtacaccaagacc
gaggaactggccgccgccggcgagacccggctgccgatcaagaccatccacctgaacaag
tcgccggtcgtcatcggcaacctgaagacgctgggcccggcgcgcgagcgctggggcctg
gacctcgagcgcgcgctggtgcacgccgaacgcgccgccgcgctgggccgcacgctggag
ccgctgtggagcctggtcttcgccaagccggcggccggcgccccggtcgatgtcgacgaa
gacctgtacggcggtttcctcggcgacgaggaccggcgccagctgcagcgcctgcgcggc
ctggacggcgcggcgctggcctcgcgccgcccggctttcgacgacccgcggctggacgag
ctgctgttccgctaccgcgcgcgcaacttcgccgacacgctggacgccgaagagcgcgag
cgctgggcggcgcaccgccacgcacgcctgatcgacggcgccggcggcgcgctgacgctg
caggcgtatgccgagcgcatcgacgaactcgccgaagcggcggccgagcgcgacgacgaa
cgcgcgcaatcgctgctcgaagcgcttgtcgactgggccgagcagctcgcgccgcaggac
taa
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