Rubrivivax gelatinosus: RGE_13400
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Entry
RGE_13400 CDS
T01803
Symbol
pcnB
Name
(GenBank) poly(A) polymerase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE_13400 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rge03019
]
RGE_13400 (pcnB)
Enzymes [BR:
rge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
RGE_13400 (pcnB)
Messenger RNA biogenesis [BR:
rge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RGE_13400 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
FXR_C1
Motif
Other DBs
NCBI-ProteinID:
BAL94681
UniProt:
I0HNU4
LinkDB
All DBs
Position
1377976..1379544
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AA seq
522 aa
AA seq
DB search
MIKKFIDRLLGKSPAPEAPAAPPAIPLGQRVEIPAEEHRIDPRLLDDNAVRVVRTLKDAG
YEAYIVGGAVRDLLVNLRPKDFDVATNATPEQVKALFRRAFIIGRRFRLVHVIFGRGREH
EVIEVSTFRAFMDPAAAEQVEGNEKTVRGEATDQRRVVDASGRVLRDNVWGPQIEDAARR
DFTINAMYYDPTTQIVVDYHGGLADSRARVLRMIGDPETRYREDPVRIVRVVRIAAKLGF
EVEPATRAPMRKMAALLANVPPSRMFDEMVKLLQTGHALKSLAELKKQGLDQGVFPVLDA
AFRADARHPKRDEFIRFALEDTDARVNDGRAVVPSFMLAVMLWHDVLDRWAAIQAGGEAP
FPALQQAVDAVFDARIGDISGRGKLGGDMREIWLMQPRFERRTPAAARALVAQARFRAGY
DFLRLRADVGEIAPALAEWWEDFHLGGDDEREAMLAELKPASKRVHRVPAGSTVAAAAAA
TPAPAEAADDDAPADAAPAKKRRRRRRRPAGGGAPSAPAAAE
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaattcatcgaccgcctgctcggcaagtcgcccgcacccgaggcgccggcg
gcgccgccggcgatcccgctcggccagcgtgtcgagatccccgccgaggagcaccgcatc
gacccgcggctgctcgacgacaacgcggtgcgcgtcgtgcgcacgctcaaggacgccggc
tacgaggcctacatcgtcggcggcgcggtgcgcgacctgctcgtcaacctgcggcccaag
gacttcgacgtcgcgaccaacgccacgcccgagcaggtgaaggcgctgttccgccgcgcc
ttcatcatcggccggcgcttccgcctggtgcacgtgatcttcggccgcggccgcgagcac
gaggtcatcgaggtctcgaccttccgcgccttcatggacccggctgcggccgagcaggtg
gagggcaacgagaagaccgtgcgcggcgaggcgaccgatcagcggcgcgtcgtcgacgcc
agcggccgcgtgctgcgcgacaacgtctggggcccgcagatcgaggacgcggcgcgccgc
gacttcacgatcaacgcgatgtactacgacccgacgacgcagatcgtcgtcgactaccac
ggcggcctggccgactcgcgtgcccgcgtgctgcgcatgatcggcgaccccgagacgcgt
taccgcgaagacccggtgcgcatcgtgcgcgtcgtgcgcatcgccgccaagctgggcttc
gaggtcgagccggcgacgcgcgcgccgatgcgcaagatggccgcgctgctggccaacgtg
ccgccctcgcgcatgttcgacgagatggtcaagctgctgcagaccggccacgcgctcaag
agcctggccgagctgaagaagcagggcctggaccagggcgtgttcccggtgctcgacgcc
gccttccgcgccgacgcacgacaccccaagcgcgacgagttcatccgcttcgcgctcgaa
gacaccgacgcccgcgtcaacgatggccgcgccgtcgtgccgagcttcatgctcgcggtg
atgctctggcacgacgtgctcgaccgctgggcggcgatccaggccggtggcgaagcgccg
ttcccggcgctgcagcaggccgtcgacgcggtcttcgacgcgcgcatcggcgacatctcc
ggccgcggcaagctcggcggcgacatgcgcgagatctggctgatgcagccgcgtttcgag
cgccgcacgccggccgcggcgcgcgcgctcgtggcccaggcgcgtttccgcgccggctac
gacttcctgcgcctgcgcgccgacgtcggcgagatcgcgccggcgctggccgagtggtgg
gaggacttccacctcggcggcgacgacgaacgcgaggcgatgctggccgagctgaagccg
gcctccaagcgtgtgcaccgcgtgcccgcgggcagcacggtggccgccgctgccgcggcc
acgccggcgccggccgaggctgccgacgacgacgccccggccgacgccgcgccggccaag
aaacgccgccgtcgccgccgtcgtccggccggtggcggtgcgccgtcggcgcccgccgcc
gccgaatga
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