Rubrivivax gelatinosus: RGE_13680
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Entry
RGE_13680 CDS
T01803
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit DnaE
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03030
DNA replication
rge03430
Mismatch repair
rge03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGE_13680 (dnaE)
03430 Mismatch repair
RGE_13680 (dnaE)
03440 Homologous recombination
RGE_13680 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rge03032
]
RGE_13680 (dnaE)
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_13680 (dnaE)
Enzymes [BR:
rge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RGE_13680 (dnaE)
DNA replication proteins [BR:
rge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RGE_13680 (dnaE)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RGE_13680 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BAL94709
UniProt:
I0HNX2
LinkDB
All DBs
Position
1401520..1405029
Genome browser
AA seq
1169 aa
AA seq
DB search
MPFVHLRTHTEYSVVDGTLRIDDAADAAKADGQPALAITDLSNLFGAIKFYKACRGAGVK
PVVGVDVWMDPLPDAAERQPTRLALLVQDRGGYLNLCELLARAWTQNVQRNQAWLKWEWL
RELSGGLIAMSGADMGAVGQALLAGDEERAAAAARELADIFPGRFYLELQRAGLPTNEAQ
VRAAVPLAARLGLPVVATHPIQFLGPDDFEAHEARVCIAEGETLANPKRIKRFTREQHFK
TAEQMQALFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPDGSPIEVYFRKASHEGL
EKRLAALFPKEEERDKRRPEYVERLEFELDTILKMGFPGYFLIVSDFIVWAKANGCPVGP
GRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQGNRDRVIRYVKE
KYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLIPAPPGKTVTLAKVPEKP
DPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRNIGMHAGGVLIAPGKITDFCP
LYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELARQYIVARRPNMKDFSYETL
PLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLEDLIALNALYRPGPMDLIPTF
VARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK
AEEMAKHRAIFREGAAKKDIPEAKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTAWIKV
HCTAEFFAANMTIEADNTDKLKVLLADAKLFGIRFDPPDVNTGTLRFEPIEDKRIRYGLG
AVKGTGAGAIEAIVAAREGRSGDGGGPFRSLFDFCARVDRQRVNKRVVEALIKAGAFDSL
HADRAATLASVGLAFEWADTQAANKDQGGLFDFGDAHGSSTQEPALVAVEPWSVRERLMQ
EKIAIGFYLSGHLFDACRDEVRKFVRRDIVELVDSREPQSVAGIVSELRVINGQRGRVAI
FKLDDGSEAIEAVANEELLDASRELLREDELVIVVGKLQPDRFSGGLRLNAQQVWDLATA
RARFGRYLSVEVNGGLPPVADVLKLWPARRVETEEGETQQGLAVRLKLKRATAVGELDLG
SDARFWPCDEALARWKTIAEQGRASIVYE
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcgttcacctgcggacgcacaccgagtattccgtcgtcgacggcaccttgcgc
atcgacgacgcggccgacgccgccaaggccgacggccagccggcgctggccatcaccgac
ctgtccaacctcttcggcgcgatcaagttctacaaggcctgccgcggcgcgggcgtcaag
cccgtcgtcggcgtcgacgtctggatggacccgctgcccgacgccgccgagcgccagccg
acgcgcctggcgctgctggtgcaggaccgcggcggctacctgaacctctgcgagctgctg
gcgcgcgcctggacgcagaacgtgcagcgcaaccaggcctggctgaagtgggaatggctg
cgcgagctctcgggcgggctgatcgcgatgtccggtgccgacatgggcgccgtcggccag
gcgctgctggccggcgacgaggagcgtgccgctgccgccgcgcgcgagctggccgacatc
tttccgggccgcttctatctggagctgcagcgtgccggtttgccgaccaacgaggcccag
gtgcgggccgcggtgccgctggccgcgcgtctggggctgccggtcgtcgccacgcacccg
atccagttcctcggccccgacgacttcgaggcccacgaggcgcgggtctgcatcgccgaa
ggcgagacgctggccaaccccaagcgcatcaagcgcttcacgcgcgagcagcacttcaag
accgccgagcagatgcaggccttgttcgccgacgtgcccagcgcgatcgcgaacacggtg
gagatcgcgcgccgctgcagcctgacgctggtgctgggcaagccgcgcctgcccgacttc
ccgacccccgacggctcgccgatcgaggtctatttccgcaaggcctcgcacgaagggctg
gagaagcgcctggcggcgctgttcccgaaggaggaagagcgcgacaagcgccgccccgag
tacgtcgagcgcctggagttcgagctcgacaccatcttgaagatgggtttcccgggctac
ttcctcatcgtctcggacttcatcgtctgggccaaggccaacggctgcccggtgggcccg
ggccgcggctcgggcgcgggctcgctggtcgcctacgcgctgttcatcaccgacctcgac
ccgctgcagtacaagctgctgttcgagcgcttcctgaacccggagcgcgtgtcgatgccc
gacttcgacatcgacttctgccagggcaaccgcgaccgtgtgatccggtacgtgaaggag
aagtacggccgcgacgcggtgggccagatcgcgaccttcggcacgatggccgccaaggcc
gcgctgcgcgacgtcggccgcgtgctgggcatgggctacggccacgtcgacagcatcgcc
aagctgatcccggcgccgccgggcaagacggtgacgctggccaaggtgcccgagaaaccc
gaccccggcatcatctacgcgcgccaggaagaacccgagatcgaccgccgcgaggccgcc
gaggaggaagtggccgagctgctgtcgctggccacgcgtgtcgaaggcatggtgcgcaac
atcggcatgcacgccggcggcgtgctgatcgcgccgggcaagatcaccgacttctgtccg
ctgtaccagcagcccggcagcgacagcgcggtcagccagtacgacaaggacgacgtcgag
gccatcggcctggtgaagttcgactttctggggctggcgacgctgacgatcctggagctg
gcgcgccagtacatcgtcgcgcggcggccgaacatgaaggacttcagctacgagacgctg
ccgctggacgaccagcgtgtctacaagctcttctccgacggcctgaccgaggcggtgttc
cagttcgaatcgcgcggcatgcagggcatgctgcgcgaggccaagcccagccggctggaa
gacctgatcgcgctgaacgcgctgtaccgcccgggcccgatggacctgatcccgaccttc
gtcgcgcgcaagcacggcaaggagacggtcgagtacccgcacccgctgctggagaccgtg
ctcggcgagacctacggcgtcatggtctaccaggagcaggtgatgcagacggcgcaggtg
ctgggcggctattcgctcggcggcgccgacttgctgcgccgcgcgatgggcaagaagaag
gccgaggagatggccaagcaccgcgcgatcttccgcgagggtgcggccaagaaggacatc
cccgaagcgaaggccgacgaggtcttcgacttgatggagaagttcgccggctacggcttc
aacaagtcgcacgcggccgcgtactcgctgctggcctatcacacggcctggatcaaggtg
cactgcacggccgagttcttcgcggccaacatgacgatcgaagccgacaacaccgacaag
ctgaaggtgctgctggccgacgccaagctgttcggcatccgcttcgatccgcccgacgtc
aacaccggcacgctgcgtttcgagccgatcgaggacaagcgcatccgctacggcctgggt
gccgtcaagggcaccggcgcgggtgcgatcgaggccatcgtcgcggcgcgcgaaggccgc
tcgggcgacggcggcggcccgttccgcagcctgttcgacttctgcgcgcgggtcgaccgc
cagcgtgtcaacaagcgtgtcgtcgaggcgctgatcaaggccggtgccttcgactcgctg
cacgccgaccgcgccgcgacgctggccagcgtcggcctggctttcgagtgggccgacacg
caggccgccaacaaggaccagggcgggctgttcgacttcggcgacgcgcacggatcgagc
acgcaggagccggcgctggtcgccgtggagccgtggtcggtgcgcgagcggctgatgcag
gagaagatcgccatcggcttctacctgtcgggccatctgttcgacgcctgccgcgacgag
gtgcgcaagttcgttcgccgcgacatcgtcgagctggtcgactcgcgcgagccgcagtcg
gtggccggcatcgtctccgagctgcgtgtcatcaacggccagcgcgggcgtgtcgcgatc
ttcaagctcgacgacggcagcgaggccatcgaggccgtggccaacgaggaactgctggac
gccagccgcgagctgttgcgcgaagacgaactggtcatcgtcgtcggcaagctgcagccc
gaccgcttctccggcggcctgcgcctgaatgcgcagcaggtctgggacctggcgacggcg
cgtgcgcgtttcggccgctacctgtcggtggaggtcaacggtggcctgccgccggtagcc
gacgtgctgaagctgtggccggcgcgccgcgtcgagaccgaggagggcgagacccagcaa
ggcctggcggtgcggctcaagctcaaacgtgcgacggccgtcggcgagctcgacctcggc
agcgacgcacgcttctggccctgcgacgaggcgctggcgcgctggaaaacgatcgccgag
caggggcgcgcatccatcgtctacgagtga
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