Rubrivivax gelatinosus: RGE_15010
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Entry
RGE_15010 CDS
T01803
Symbol
kdsA
Name
(GenBank) 2-dehydro-3-deoxyphosphooctonate aldolase KdsA
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge00541
Biosynthesis of various nucleotide sugars
rge01100
Metabolic pathways
rge01250
Biosynthesis of nucleotide sugars
Module
rge_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
RGE_15010 (kdsA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
rge01005
]
RGE_15010 (kdsA)
Enzymes [BR:
rge01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
RGE_15010 (kdsA)
Lipopolysaccharide biosynthesis proteins [BR:
rge01005
]
Lipid A
RGE_15010 (kdsA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
Motif
Other DBs
NCBI-ProteinID:
BAL94842
UniProt:
I0HPA5
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All DBs
Position
complement(1543760..1544617)
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AA seq
285 aa
AA seq
DB search
MKLCGYDVGLDRPFFLISGPCVVESEQLQMDVAGRLKEITSALGIPFIFKSSYDKANRSS
GSSFRGPGMERGLEILAKVRREIGVPVLTDVHTEAEVPLVAAAVDMLQTPAFLCRQTDFI
RAVAQCGKPVNIKKGQFLAPHDMKNVIDKARAAAREKGLAEDLFTVCERGASFGYNNLVS
DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLSRAAVGVGVAGLFMETH
PDPANAMSDGPNAVPLKHMKALLEQLVAIDRVVKQQPLLENDFSC
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgaagctctgcggttacgacgtcggcctcgaccggccgttcttcctgatctccggcccc
tgcgtcgtcgaaagcgagcagctgcagatggacgtcgccgggcggctgaaggagatcacc
tcggcgctgggcatcccgttcatcttcaagtctagctacgacaaggccaaccgctccagc
ggcagctccttccgcggcccgggcatggagcgcgggctggagatcctggccaaggtgcgc
cgcgagatcggcgtgccggtgctgaccgacgtgcacaccgaagccgaggtgccgctggtg
gcggccgcggtcgacatgctgcagacgccggctttcctgtgccgccagaccgatttcatc
cgcgccgtcgcccagtgcggcaagccggtgaacatcaagaagggccagttcctcgctccg
cacgacatgaagaacgtcatcgacaaggcccgcgccgcagcgcgcgagaaaggcctggcc
gaggacctgttcaccgtctgcgaacgcggcgcgagcttcggctacaacaacctcgtctcc
gacatgcgcagcctggcgatcatgcgcgagaccggcgcgccggtggtcttcgacgccacg
cacagcgtgcagctgccgggcggccagggcaccagctcgggcggccagcgcgagttcgtg
ccggtgctgtcgcgcgcggcggtcggcgtcggcgtcgcggggctcttcatggagacgcac
ccggacccggccaacgcgatgtccgacggcccgaacgcggtgccgctgaagcacatgaag
gcgctgctggaacagctcgtcgccatcgaccgcgtcgtcaagcagcagccgctgctcgag
aacgacttcagctgctga
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