Rubrivivax gelatinosus: RGE_15530
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Entry
RGE_15530 CDS
T01803
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE_15530 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rge03019
]
RGE_15530 (pnp)
03016 Transfer RNA biogenesis [BR:
rge03016
]
RGE_15530 (pnp)
Enzymes [BR:
rge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RGE_15530 (pnp)
Messenger RNA biogenesis [BR:
rge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RGE_15530 (pnp)
Transfer RNA biogenesis [BR:
rge03016
]
Prokaryotic type
tRNA degradation factors
RGE_15530 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
DUF5813
KH_2
S1_2
KH_KhpA-B
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BAL94894
UniProt:
I0HPF7
LinkDB
All DBs
Position
1592416..1594716
Genome browser
AA seq
766 aa
AA seq
DB search
MSMFNKVTKSFQWGSHQVTMETGEIARQSTGAVVVSVDDTVVLATVVAKTEAKTGQDFFP
LTVDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVL
SLNPEVQADIPAMIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQMDLV
VAGTEAAVLMVESEATELSEEVMLGAVVFGHDQGKIAIAAINELVREAGKPAWDWQPPAK
DEPFIAKVNALAEEPLRAAYQIRSKQARTQATRAVGASVQAALKEEGVAFDPVAVDNLLF
EIEARIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGT
ERDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPPK
DEFPYTMRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRFAVL
TDILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMV
EAVGGAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTDETGCTIDIGEDGTITIA
STDADKAAFAQKRIEEITAEAEIGKVYEGPITKILDFGALVNILPGKDGLLHISQIAHQR
VEKVTDFLTEGQVIKVKVLETDEKGRIKLSMKALLDKPEGYVEEERPRRERSDRGDRGDR
GDRGPRREREPREPREPRAEAAAATDAPATEAPAPEQGAERAPGQE
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgttcaacaaggtcacgaagagcttccaatggggctcgcaccaggtcacgatg
gaaacgggcgagatcgcccgccagtccaccggcgccgtcgtcgtcagcgtcgatgacacc
gtcgtgctggctaccgtggtcgccaagactgaagccaagaccggccaggacttcttcccg
ctgaccgtcgactacatcgagaagacctacgccgccggcaagatccccggcagcttcttc
aagcgtgaaggccgcccgagcgagctcgagaccctgacctcgcgcctgatcgatcgcccg
atccgcccgctgttccccgaaggcttctacaacgaagtccaggtcgtcatccacgtgctg
agcctgaaccccgaggtccaggccgacatcccggcgatgatcgcgaccagcgccgcgctg
tcgatcagcggcatcccgttcaacggcccgatcggcgccgcgcgcgtcggctacgtcaac
ggcgaatacgtgctcaacccgagcgccgcccaactggccgacagccagatggacctcgtc
gtcgccggcaccgaagccgccgtgctgatggtcgagtccgaagccaccgagctgtccgag
gaagtgatgctcggcgccgtcgtcttcggccacgaccagggcaagatcgcgatcgccgcg
atcaacgaactggtgcgcgaagccggcaagccggcctgggactggcagccgccggccaag
gacgagcccttcatcgccaaggtcaacgcgctggccgaagagccgctgcgcgccgcctac
cagatccgcagcaagcaggcccgcacccaggccacccgcgccgtcggcgccagcgtgcag
gccgcgctgaaggaagagggcgtcgccttcgacccggtcgccgtcgacaacctgctgttc
gagatcgaagcgcgcatcgtgcgcggccagatcctggccggcgagccgcgcatcgacggc
cgcgacacgcgcaccgtgcgcccgatcgagatccgctccagcgtgctgccgcgcacccac
ggctcggcgctgttcacgcgtggcgagacgcaggcgctggtcgccgcgacgctgggcacc
gaacgcgacgcgcagcgcatcgacgcgctggccggcgagttcgaagaccgcttcatgctg
cactacaacatgcccccgttcgccaccggcgagacgggccgcgtgggcagccccaagcgc
cgcgagatcggccacggccgcctggccaagcgcgcgctggtcgccgtgctgccgcccaag
gacgagttcccgtacacgatgcgcgtggtctcggagatcaccgagtccaacggttcgtcg
tcgatggcctcggtctgcggcggctgcctgtcgctgctggacgccggcgtgccgctgaag
gcgcacgtcgccggcatcgcgatgggcctgatcaaggaaggcaaccgcttcgccgtgctg
accgacatcctcggtgacgaggatcacctcggcgacatggacttcaaggtggccggcacc
gccagcggcatcacggcgctgcagatggacatcaagatccagggcatcaccaaggagatc
atgcaggtcgccctggcgcaggccaaggaagcgcgtctgcacatcctgggcaagatggtc
gaggccgtcggcggcgccaaggccgaggtgagccagttcgccccgcgcctgtacacgatg
aagatcaacccggagaagatccgtgacgtcatcggcaagggtggcgcgacgatccgggcg
ctgaccgacgagaccggctgcacgatcgacatcggcgaagacggcacgatcacgatcgcc
agcaccgacgccgacaaggccgccttcgcccagaagcgcatcgaggagatcacggccgag
gccgagatcggcaaggtctacgaaggcccgatcaccaagatcctggacttcggcgccctg
gtcaacatcctgccgggcaaggacggcctgctgcacatcagccagatcgcccaccagcgc
gtcgagaaggtcaccgacttcctgaccgaaggccaggtcatcaaggtcaaggtgctcgag
accgacgagaagggccgcatcaagctcagcatgaaggcgctgctcgacaagcccgagggc
tacgtcgaggaagagcgtccgcgccgcgagcgcagcgaccgaggtgaccgtggggaccgc
ggcgaccgtggcccgcgccgcgagcgtgaaccccgcgagccgcgtgagccgcgtgccgag
gcggctgcggccaccgacgcgccggccaccgaggcgccggctccggaacagggcgccgag
cgcgccccgggccaggagtaa
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