Rubrivivax gelatinosus: RGE_16250
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Entry
RGE_16250 CDS
T01803
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta HupB
KO
K03530
DNA-binding protein HU-beta
Organism
rge
Rubrivivax gelatinosus
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rge03032
]
RGE_16250 (hupB)
03036 Chromosome and associated proteins [BR:
rge03036
]
RGE_16250 (hupB)
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_16250 (hupB)
DNA replication proteins [BR:
rge03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RGE_16250 (hupB)
Chromosome and associated proteins [BR:
rge03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RGE_16250 (hupB)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RGE_16250 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
UBA_HYPK
Nairo_nucleo
Motif
Other DBs
NCBI-ProteinID:
BAL94966
UniProt:
I0HPM9
LinkDB
All DBs
Position
1674271..1674543
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AA seq
90 aa
AA seq
DB search
MNKTDLIAHIAQQADLSKASATRALEAALEGVQTALKNGDSVAIAGFGTFEVSERAARTG
RNPRTGEAIEVKAAKVPKFRPGKALKDLLG
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagacggatctgatcgcccacatcgcccagcaggcggacctgtccaaggcctcg
gccacgcgcgctctcgaagccgcgctcgaaggcgtgcagaccgcgctgaagaacggcgac
agcgtcgcgatcgccggcttcggcaccttcgaggtctccgagcgcgccgcgcgcaccggc
cgcaacccgcgcaccggcgaggccatcgaggtcaaggccgccaaggttccgaagttccgt
ccgggcaaggccctgaaggacctgctcggctga
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integrated database retrieval system
