Rubrivivax gelatinosus: RGE_18140
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Entry
RGE_18140 CDS
T01803
Name
(GenBank) putative ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03420
Nucleotide excision repair
rge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGE_18140
03430 Mismatch repair
RGE_18140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_18140
Enzymes [BR:
rge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGE_18140
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGE_18140
MMR (mismatch excision repair)
Other MMR factors
RGE_18140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
UvrD_C
UvrD_C_2
PhoH
DEAD
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
BAL95155
UniProt:
I0HQ68
LinkDB
All DBs
Position
complement(1893071..1894780)
Genome browser
AA seq
569 aa
AA seq
DB search
MVWSPQKLAFLGCPGHALALAGPGAGKTHVALVKAQQQVAHGALNPGQKVLFLSFARPTV
ARILEKAAELISPEKLKRLEINTYHGFAWSILRSHGYLLNTARSITLLPPPEAAAHFADV
DASVREQEMLRLFEQEGRLHFDLFARLVAQLFQRSARLAGIYCDAYPMVILDEFQDTNAD
EWAMIRQLGRHSRLIALGDPDQRIYEFRGADPRRLGEFVEAFQPGSFDFSGENHRSNGTD
IAAFGNDLLTDRNRGRRYTHVKIVRYGFRRNQSPHFRAKAEVLAALRRLRDQPNTSVSVL
VPSKAFMLQFSQYLSSDLDGLPALRHDVAMDAESPSLAANVIAVLLEGGDIAALASRLVA
TLHTHIRGRGGNKAPAQVEMDLAGAIGAYMSTGKIRGKNRKLVVMECQRIAAERADLCLS
GNPEEDWSAVRALIAASAAPQVARVAEDARFLRLLHRGSALRTALSEMWRTQGDYLGAEE
ALRDALLQEHFVVAQKEWRGLHLMTIHKAKGKEFDEVVIYEGTYSGRIVAANADARRIAQ
SRLALRVAVTRAIRRTTIVTPQRDGCQFL
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggtctggagtccgcagaagctcgccttcctgggctgccccggacatgcattggcccta
gctggcccgggcgccggcaagactcacgtggcgctcgtcaaagcccagcagcaggttgcc
cacggagcgttgaacccaggccaaaaggtgctgttcctgagctttgcaaggccaacggtc
gcgcgaatcctcgagaaggcggccgagctcatctcgccggaaaaactcaagcgcctcgag
atcaacacgtaccacgggttcgcatggagcatcctgcgcagccacggctatctgttgaac
accgcgaggtccatcacccttctgccgccgccggaggccgcggcccactttgcggacgtg
gacgcaagcgtccgcgagcaggagatgcttcgtctattcgagcaggaggggcggctgcac
ttcgacctgttcgcgcggctggtcgcgcagctcttccagcgcagcgcccggttggcgggc
atctactgcgacgcctatcccatggtcatcctggacgagttccaggacacaaacgccgac
gaatgggcgatgatccgtcagctgggtcggcatagccgcctaatcgcgctcggagacccc
gaccagcggatctacgagttccgcggtgccgatccccgccgcctgggtgagttcgtcgag
gcgttccaaccggggagcttcgatttctcgggcgagaaccaccgcagcaacggaacggac
atagccgccttcggcaacgacctgttgaccgatcggaaccgcggcagacggtacacgcac
gtgaagatcgtgcgctatggcttccgcaggaaccagagcccgcactttcgggcgaaggcg
gaggttctcgccgcgctgcggcgtctgcgcgaccagccaaacacatcggtgtccgtcctc
gtgccgtcgaaggcgttcatgctgcagttctcgcagtacctgtcgtctgacctggatggc
ctgcctgcacttcggcatgacgttgcgatggacgcggagtcgccgtctctggcggcgaac
gtcatcgcagtgttgctggaaggcggcgacatcgcggcgctggcgtcacgcctagtcgcc
acgctgcacacccacatccgtggccgtggtggaaacaaggctccggcgcaggtggagatg
gacctcgctggcgccatcggcgcatatatgtcgactggaaagatccgaggcaagaacagg
aagctcgtcgtcatggagtgccagaggattgcggcggaacgcgcggatctctgcctctca
gggaaccccgaggaagattggtccgccgtgcgcgcgctgatcgccgcttcggccgcgccc
caagtggcccgcgtggccgaggacgctcgctttctccgcctgctgcacaggggctctgcg
ctgcgcacagcgcttagcgagatgtggaggacgcagggtgactatctcggtgcagaggag
gcgcttcgcgacgccctgctccaggagcatttcgtcgtcgcgcagaaggagtggcgcggg
ctgcacctgatgaccatccacaaggccaaggggaaggagtttgacgaggtcgtgatctat
gagggcacctactccgggcggatcgtggctgcgaacgccgacgcaaggcgcatcgcgcag
tcgcggctggcgctgcgcgtcgcggtcacgcgggccatccggcgcacgacgatcgtgacg
ccccagagagacgggtgccagtttctttag
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