Rubrivivax gelatinosus: RGE_24030
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Entry
RGE_24030 CDS
T01803
Symbol
dapE
Name
(GenBank) succinyl-diaminopimelate desuccinylase DapE
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge00300
Lysine biosynthesis
rge01100
Metabolic pathways
rge01120
Microbial metabolism in diverse environments
rge01230
Biosynthesis of amino acids
Module
rge_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RGE_24030 (dapE)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rge01002
]
RGE_24030 (dapE)
Enzymes [BR:
rge01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
RGE_24030 (dapE)
Peptidases and inhibitors [BR:
rge01002
]
Metallo peptidases
Family M20
RGE_24030 (dapE)
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SSDB
Ortholog
Paralog
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GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
Vexin
Motif
Other DBs
NCBI-ProteinID:
BAL95744
UniProt:
I0HRV7
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All DBs
Position
complement(2530288..2531433)
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AA seq
381 aa
AA seq
DB search
MNDALRLAEQLIARRSVNPDDAGCQALIASRLAALGFECETLVCGPENFRVTNLLARRTG
GLPGPVLAFAGHTDVVPTGPLERWTSDPFVPSHRDGRLYGRGAADMKSSLAAMVVAVEEF
VAAQPRHAGAIAFLLTSDEEGPSVDGTVRLVELLQQRGERLDACIVGEPTSVSRLGDMVK
NGRRGSLSGRLTVIGKQGHIAYPQLAKNPIHVFAPALAELAAMRWDEGNAFFPPTSWQVS
NLHGGTGASNVIPGELVVDFNFRFSTESTPESLQARVAEVLARHGVEHRLEWTLSGRPFL
TTPGPLIAALGAAITAECGVEPELSTTGGTSDGRFIAAICPQVVEFGPLNATIHQIDEHV
DAASVETLKNVYRGTLKNFFP
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgcgctgcgcctggccgagcagctgatcgctcggcgctcggtcaaccccgac
gacgccggctgccaggcactgatcgcctcgcgcctggcggcgctgggcttcgagtgcgag
acgctggtctgcggcccggagaacttccgcgtcaccaaccttctggcgcgccgcaccggc
ggcctgccgggcccggtgctggccttcgccggccacaccgacgtcgtgccgaccggcccg
ctggagcgctggacgagcgaccccttcgtgcccagccaccgcgacggccggctctacggc
cgcggcgccgccgacatgaagagctcgctggcggcgatggtcgtcgccgtcgaggagttc
gtcgccgcgcagccgcgccacgccggcgcgatcgccttcctgctgaccagcgacgaagag
ggcccgtcggtcgacggcaccgtgcgcctggtggagctgctgcaacagcgcggcgaacgc
ctggacgcctgcatcgtcggcgagccgacttcggtctcgcgcctgggcgacatggtcaag
aacggccgccgcggctcgctgtcgggccggctgacggtcatcggcaagcagggccacatc
gcctacccgcagctggcgaagaacccgatccacgtcttcgcgccggcgctggccgagctg
gcggcgatgcgctgggacgagggcaacgccttcttcccgccgacgagctggcaggtcagc
aacctgcacggcggcaccggggcgagcaacgtcatcccgggcgaactggtcgtcgacttc
aacttccgcttcagcaccgagtcgacgcccgagtcgctgcaggctcgggtcgccgaagtg
ctggcgcgccacggcgtcgagcaccggctggagtggacgctctccggccgccccttcctg
acgacacccggcccgctgatcgccgcgctgggcgcggccatcacagccgaatgcggcgtc
gagcccgagctcagcaccaccggcggcacctccgatgggcgtttcatcgccgcgatctgc
ccgcaggtcgtcgagttcgggccgctcaacgccaccatccaccagatcgacgaacacgtc
gacgcggcctcggtcgagacgctgaagaacgtctaccgcggcacgctgaaaaacttcttt
ccatga
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