Rubrivivax gelatinosus: RGE_24810
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Entry
RGE_24810 CDS
T01803
Name
(GenBank) putative DNA topoisomerase, type I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rge
Rubrivivax gelatinosus
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rge03032
]
RGE_24810
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_24810
Enzymes [BR:
rge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RGE_24810
DNA replication proteins [BR:
rge03032
]
Prokaryotic type
DNA Topoisomerases
RGE_24810
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RGE_24810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF4124
RHS_repeat
Motif
Other DBs
NCBI-ProteinID:
BAL95822
UniProt:
I0HS35
LinkDB
All DBs
Position
2611482..2612552
Genome browser
AA seq
356 aa
AA seq
DB search
MPLDATPPPGLVSSGAGDPGIRRLRRRGGFAYVDADGRPVRDAATLERIRRLVLPPAWEE
VWICADARGHLQATGRDARGRTQYRYHADWAAHRGLTKFERLREFGARLPVLRARIGRVL
ASGDEPTRERVLATLVRLLDTTWMRIGNDEYARLNGSFGLSTLRDEHARVRGDSLRLSFV
GKGGVRHEVAQADRRVARVVRRCRELPGQELFQWVDADGSVRRVGSGEVNAWLAEAAGVP
LTAKDFRTWHGSVAALALTLEACASTSPGTPAAVVKAVARRLGNTPAVCRKAYVHPRVLA
LADALAGDLADGERRCALLERAWVKRPAPVAGLSTTERRLLALLATPPRRAGRPAR
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgcccctggacgcgacaccgccgccgggcctggtcagctccggtgccggcgatcccggc
atccggcgcctgcgccggcgcggcggcttcgcctacgtcgacgccgacggccgcccggtg
cgcgacgcggcaacgctggaacgcatccgccgcctcgtgctgccgccggcctgggaggag
gtctggatctgcgccgacgcccgcggccatctgcaggccaccgggcgcgacgcgcgcggc
cgcacgcagtaccgctaccacgccgactgggccgcgcatcgtgggttgacgaagttcgag
cgcctgcgggagttcggtgcccggctgccggtgctgcgcgcgcggatcggccgcgtgctg
gcctccggcgacgaaccgacgcgcgaacgcgttctggcgacgctggtgcggctgctggac
acgacctggatgcgcatcggcaacgacgagtacgcgcgcctgaacggctcgttcggcctg
agcacgctgcgcgacgaacacgcccgcgtgcgcggcgactcgctgcgcctgtccttcgtc
ggcaagggcggggtgcgccacgaggtcgcgcaggccgaccggcgcgtcgcccgtgtcgtg
cgccgctgccgcgagctgccggggcaggagctgttccagtgggtcgatgccgacggcagc
gtgcggcgcgtcggttcgggcgaggtcaacgcctggctggccgaagccgccggcgtgccg
ctgacggccaaggacttccgcacctggcacggcagcgtcgccgcgctggcgctgacgctg
gaggcttgcgcctcgacctcgccgggcacgccggcggcggtcgtcaaggccgtcgcgcgc
cgcctgggcaatacgccggcggtctgccgcaaggcctacgtgcacccgcgcgtgctggcg
ctggccgacgcgctcgccggcgatctggccgacggcgagcggcgctgcgcgctgctggaa
cgcgcctgggtcaagcgcccggcaccggtggccgggctgtcgaccaccgagcgccggctg
ctcgcgctgctggcgacgccgccgcgccgggccgggcgccccgctcgctga
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