Rubrivivax gelatinosus: RGE_27060
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Entry
RGE_27060 CDS
T01803
Symbol
rpoD
Name
(GenBank) RNA polymerase primary sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rge
Rubrivivax gelatinosus
Pathway
rge02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RGE_27060 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rge03021
]
RGE_27060 (rpoD)
Transcription machinery [BR:
rge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RGE_27060 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Fib_alpha
Motif
Other DBs
NCBI-ProteinID:
BAL96045
UniProt:
I0HSQ8
LinkDB
All DBs
Position
2864729..2866924
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AA seq
731 aa
AA seq
DB search
MTAKKPASAAPADEAKTTKAKAAAIDTAKPAKKTAKAPAKTDAKAKAGKKDTKKAAEEDD
LVDLEAELEAEPEAEAEAEVEVDASEGKEAKAKPLRMKVSRAKERALMREFGLDEATLTE
EEVAKRRQELKTLIKMGKTRGFLTHQEINDHLPEKLVDNEILEAIVSMLNDMGIAVYEQA
PDAATLLINGSNTATATDEEAEEAAEAALSTVDSEFGRTTDPVRMYMREMGSVELLTREG
EIEIAKRIEGGLQAMMLAISASPTTIAEILAMADKIAAGEMQISEVVDGFVSDDEADDYV
AEEDFDEFDEDDDDDGAGGSKALTKKLEELKKQALEKFDLLRSHFDRMRKAYEKDGYKSP
AYNKAQESISDDLMTIRFTVKTIEKLCQILRAQVDDVRRYEREIRKIVVDKCGMPQEQFI
KTFPPNVLNLKWAEKEAAAGKPYSAVLGRNLPAVQELQQKLIDLQGRAVVPLDDLKEINR
HMNAGEKASRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDAPTL
AEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNNVAPVDAAMQAGLREV
VKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAIRKLKHPSR
SDKLRTYLDNL
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaagaagcccgcatccgctgcccccgccgacgaggccaagaccaccaaggcc
aaggccgccgccatcgacaccgccaagccggcgaagaagaccgccaaggcgccggccaag
accgacgccaaggccaaggccggcaagaaggatacgaagaaggccgccgaggaagacgac
ctggtcgacctggaggccgaactcgaggcggaaccggaagccgaagcggaagccgaggtc
gaggtcgacgcgagcgaaggcaaggaagccaaggccaagccgctgcgcatgaaggtcagc
cgcgccaaggagcgcgcgctgatgcgcgagttcgggctcgacgaggccaccctgaccgaa
gaggaagtcgccaagcgccgccaggagctcaagaccctcatcaagatgggcaagacgcgt
ggtttcctgacgcaccaggaaatcaacgaccacctgcccgagaagctggtcgacaacgaa
atcctcgaggccatcgtctcgatgctcaacgacatgggcatcgcggtctacgagcaggcg
cccgacgcggccacgctgctgatcaacggcagcaacaccgccaccgcgaccgacgaggaa
gccgaagaagccgccgaagcggcgctgtcgaccgtcgacagcgagttcggccgcaccacc
gacccggtgcgcatgtacatgcgcgagatgggctcggtcgagctgctcacgcgtgaaggc
gagatcgagatcgccaagcgcatcgaaggcggcctgcaggcgatgatgctggccatcagc
gccagcccgacgacgatcgccgagatcctggcgatggccgacaagatcgccgccggcgag
atgcagatctccgaggtcgtcgacggcttcgtcagcgacgacgaggccgacgactacgtc
gccgaagaagacttcgacgagttcgacgaggacgacgacgacgacggcgccggcggcagc
aaggcgctgacgaagaagctcgaagagctgaagaagcaggcgctggagaagttcgacctg
ctgcgctcgcacttcgaccgcatgcgcaaggcctacgagaaggacggctacaagtcgccg
gcctacaacaaggcccaggagtcgatcagcgacgacctgatgacgatccgcttcacggtc
aagacgatcgagaagctgtgccagatcctgcgcgcccaggtcgacgacgtgcgccgctac
gagcgcgagatccgcaagatcgtcgtcgacaagtgcggcatgccgcaggaacagttcatc
aagaccttcccgcccaacgtcctgaacctcaagtgggccgagaaggaagccgcggccggc
aagccgtactcggcggtgctgggccgcaacctgccggcggtgcaggaactgcagcagaag
ctcatcgacctgcagggccgcgccgtcgtgccgctggacgatctcaaggagatcaaccgg
cacatgaacgccggcgagaaggccagccgcgacgcgaagaaggagatgatcgaggccaac
ctgcgcctggtgatctcgatcgcgaagaagtacaccaaccgcggcctgcagttcctggac
ctgatccaggaaggcaacatcggcctgatgaaggcggtcgacaagttcgaataccgccgc
ggctacaagttctcgacctacgccacctggtggatccgccaggcgatcacgcgctcgatc
gccgaccaggcgcgcacgatccgcatcccggttcacatgatcgagacgatcaacaagatg
aaccgcatctcgcgccagcacctgcaggagttcggcttcgagccggatgcgccgacgctg
gccgagaagatggagattcccgaggacaagatccgcaagatcatgaagatcgccaaggag
ccgatctccatggaaacgccgatcggcgacgacgacgacagccacctgggcgacttcatc
gaggacacgaacaacgtcgccccggtggacgccgcgatgcaggccggcctgcgcgaggtc
gtcaaggacatcctcgacagcctgacgccgcgcgaagccaaggtgctgcgcatgcgcttc
ggcatcgagatgtcgaccgaccacacgctggaagaagtcggcaagcagttcgacgtcacg
cgcgaacgcatccgccagatcgaagccaaggcgatccgcaagctcaagcaccccagccga
tctgacaagctgcggacgtacctggacaatctctga
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