Rubrivivax gelatinosus: RGE_28900
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Entry
RGE_28900 CDS
T01803
Symbol
cobD
Name
(GenBank) putative cobalamin biosynthesis protein CobD
KO
K02227
adenosylcobinamide-phosphate synthase [EC:
6.3.1.10
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge00860
Porphyrin metabolism
rge01100
Metabolic pathways
rge01240
Biosynthesis of cofactors
Module
rge_M00122
Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
RGE_28900 (cobD)
Enzymes [BR:
rge01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.1 Acid-D-ammonia (or amine) ligases (amide synthases)
6.3.1.10 adenosylcobinamide-phosphate synthase
RGE_28900 (cobD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CobD_Cbib
DUF6584
Motif
Other DBs
NCBI-ProteinID:
BAL96229
UniProt:
I0HT92
LinkDB
All DBs
Position
complement(3062132..3063052)
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AA seq
306 aa
AA seq
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MSAALVFAAALALAWLIDRRFGEPRDAWHPVAWLGHAIMPLHRRLPNLAPRAALVAGTLA
WWVVVGGVAALAWGLQTAIFALPHWAAVPLLALALKPSFAWRMLRDEVAAVDAAFKAGGL
PAAQQRLRNLCSRDVERLDAREVRETAIETLAENLNDSVVAPLFWFCVAGLPGAWAWRAV
NTLDAMWGYRGRWEWAGKWSARADDVLGWLPARLTALLLWRPALGWAPLAHEAARTPSPN
GGWPMGAMALRLGVRLGKPGVYTLNEHGAEADTTALARALGIAGQGAGGALVAALLWRLA
EFAWTF
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgccctcgtcttcgccgccgcgctggcgctggcctggctgatcgaccgccgc
ttcggcgagccgcgcgacgcctggcacccggtggcctggctgggccacgcgatcatgccg
ctgcaccgccggctgccgaacctggcgccgcgtgcggcgctggtcgccggcacgctggcc
tggtgggtggtggtcggcggcgtcgccgcgctcgcctggggcctgcagaccgcgatcttc
gcgctgccgcactgggccgcagtgccgctgctggcactggcgctcaagccctcgttcgcc
tggcgcatgctgcgtgacgaggtcgccgcggtcgacgccgcgttcaaggccggcggcctg
ccggcagcgcagcagcggctgcgcaacctttgcagccgcgacgtcgagcgcctggacgcg
cgcgaggtgcgcgagacggcgatcgagacgctggccgagaacctcaacgactcggtcgtc
gcgccgctgttctggttctgcgtcgccggcctgccgggcgcctgggcctggcgcgcggtc
aacacgctggacgcgatgtggggctaccgcggccgctgggaatgggccggcaagtggtcg
gcgcgtgccgacgacgtgctcggctggctgccggcgcggctgaccgcgctgctgctgtgg
cgcccggcgctgggctgggcgccgctggcgcacgaagccgcgcgcacgccgtcgcccaac
ggcggctggccgatgggcgcgatggcgctgcgcctgggcgtgcgcctgggcaagcccggc
gtctacaccctcaacgaacatggtgccgaggccgacacgacggcgctggcacgggcgctg
ggcatcgccgggcagggcgccggtggcgcgctcgtggccgcgctgctgtggcgtctggcg
gagtttgcatggactttctga
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