Rubrivivax gelatinosus: RGE_30240
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Entry
RGE_30240 CDS
T01803
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge00061
Fatty acid biosynthesis
rge00071
Fatty acid degradation
rge01100
Metabolic pathways
rge01212
Fatty acid metabolism
rge02024
Quorum sensing
rge04146
Peroxisome
Module
rge_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
RGE_30240
00071 Fatty acid degradation
RGE_30240
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
RGE_30240
09145 Cellular community - prokaryotes
02024 Quorum sensing
RGE_30240
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rge01004
]
RGE_30240
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rge04147
]
RGE_30240
Enzymes [BR:
rge01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
RGE_30240
Lipid biosynthesis proteins [BR:
rge01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
RGE_30240
Exosome [BR:
rge04147
]
Exosomal proteins
Exosomal proteins of breast milk
RGE_30240
Exosomal proteins of breast cancer cells
RGE_30240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
BAL96363
UniProt:
I0HTM6
LinkDB
All DBs
Position
complement(3210393..3211838)
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AA seq
481 aa
AA seq
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MTPALIDGTRAWSAAELAAATEAAAGWLRAQGTRVLATLLDNGAGFVVLDDAARAAGVVH
VPLPLFFDATMLGHVLASAGVDTLVAAVPLAARWPGLPWQPLASVAGALSAARLPALRPT
LPACTAKITYTSGSTGTPKGVCLTAAAMDAVADGLVQALAPLAIERHLAALPYAVLLENV
AGLLAPRRQGSTVVCPPLAEVGLTGSSSFDPARLHAAVERHEAQSLILLPQMLRAWCGWL
AASGRRAPASLRFVAVGGAAVGAPVLQAAQALGLPAYEGYGLSEGASVQTLNLPGADCPG
SAGRPLPHARVRVAADGELEVAGSLFAGYVGDAAGRSGDWWPTGDLGRIDEAGFVHVVGR
KKNLLITGYGRNVSPEWPETALRCQPAIAQAVVLGDGEPALSAVLWPASPAVGDLELAAA
VVAANSTLPDYARVARWTRAADAFDAASGLATANGRPRRDAIHARHAEALGLGAASDLAN
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
ttgacgccggcgctgatcgacggcacccgcgcctggagcgccgccgaactcgccgccgcc
accgaggccgccgccggctggctgcgtgcgcagggcacacgcgtgctcgccacgctgctg
gacaacggcgccggcttcgtcgtgctcgacgacgctgcgcgcgccgccggcgtggtgcac
gtgccgctgccgctgttcttcgacgccacgatgctgggccacgtgctggcctcggccggc
gtcgacacgctggtcgccgccgtgccgctggccgcgcgctggcccgggctgccgtggcag
ccgctggcgagcgttgccggcgccctgagcgccgcgcgcctgccggcgctgcggccgaca
ctgccggcctgcaccgccaagatcacctacacctcgggcagcaccggcacgcccaagggc
gtgtgcctgacggccgcggcgatggacgccgtggccgacggcctggtgcaggcgctggcg
ccgctggcgatcgaacgccacctcgccgcgctgccttacgcggtgctgctggagaacgtc
gccgggctgttggcgccgcgccgccagggcagcaccgtcgtctgcccgccgctggccgag
gtcggcctgacgggttcgtcgagcttcgacccggcgcggctgcatgccgcggtggaacgc
cacgaggcgcagagcctgatcctgctgccgcagatgctgcgcgcctggtgcggctggctc
gccgccagcggccggcgcgcgccggcctcgctgcgcttcgtcgccgtcggcggtgccgcg
gtcggcgcgccggtgctgcaggcggcgcaggcgctgggcctgccggcctacgaaggctac
ggcctctcggaaggcgcttcggtgcagacgctgaacctgcccggcgccgactgccccggc
agcgccggccggccgctgccgcacgcccgcgtgcgcgtcgccgccgacggcgagctggag
gtcgccggcagcctgttcgccggctacgttggcgacgccgccggccgctccggcgactgg
tggcccaccggcgacctgggccgcatcgacgaggccggcttcgtgcacgtcgtcggccgc
aagaagaacctgctgatcaccggctacggccgcaacgtctcgcccgaatggcccgagacc
gcactgcgctgccagccggccatcgcccaggccgtggtgctgggcgacggcgagccggcg
ctgtcggccgtgctctggccggcctcgccggcggtcggcgacctcgaactcgccgccgcg
gtggtggccgccaacagcacgctgcccgactacgcgcgcgtcgcgcgctggacccgtgcc
gccgacgccttcgacgccgcctcgggcctggccaccgccaacggccgcccgcgccgcgac
gccatccacgcccgccatgccgaagccctggggctcggcgcggcctccgatctcgccaac
cgctga
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