Rubrivivax gelatinosus: RGE_30260
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Entry
RGE_30260 CDS
T01803
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge00061
Fatty acid biosynthesis
rge00071
Fatty acid degradation
rge01100
Metabolic pathways
rge01212
Fatty acid metabolism
rge02024
Quorum sensing
rge04146
Peroxisome
Module
rge_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
RGE_30260
00071 Fatty acid degradation
RGE_30260
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
RGE_30260
09145 Cellular community - prokaryotes
02024 Quorum sensing
RGE_30260
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rge01004
]
RGE_30260
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rge04147
]
RGE_30260
Enzymes [BR:
rge01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
RGE_30260
Lipid biosynthesis proteins [BR:
rge01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
RGE_30260
Exosome [BR:
rge04147
]
Exosomal proteins
Exosomal proteins of breast milk
RGE_30260
Exosomal proteins of breast cancer cells
RGE_30260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
BAL96365
UniProt:
I0HTM8
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All DBs
Position
3212707..3214533
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AA seq
608 aa
AA seq
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MSTQATTSLDLSSVHTLPELLRWRVALSPDAEAYREHEAERGWVSWTWRDFGERVERCAA
ALDLLAPAPGARIAILLPNGLDAVALDQAALSRGCVPLPMHALDNPLSIAYILVDSGAEL
LVAQTEAQWQAIAGCGALPATLRQVVIRERDEAAAPGAAGGPELLSLAEWLARGQDRPAP
PPLPVGEEDLAALVYTSGTTGKPKGVMLTHRNVMANVKAVLARIAPRPDDVFLSFLPLSH
TFERTAGYYLPIAAGSTVAFARSTQHLPEDMKTVRPTVLISVPRIYERVFVKLQTMLEGS
ALKKRLFDMAQAVGWRRFCREQKLPVPGSVPAAWDALVWPLLASRVSAPLQAQFGGRLRL
AVSGGAALSAPIARCFLGLGLPIVQGYGMTESTPVISCNTPEDNDPATVGRPLDGVEVRI
GDNRELLVRGANVMRGYWNRPEDTARALEGGWLHTGDQASLDGGRIRIVGRVKEIIVTAT
GEKIAPTDLEMAIVADPLFESAWAFGDNRPFIACVVVLAAGPWERLARSLGLDPADPASL
QAPAAREAALARIRAATAAFPHYAQPRAVCLTTEPWTIESTMITPTLKLKRNNLQSRYGE
QVEALYRR
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgcaagccaccacctccctcgacctgagttccgtccacaccctgcccgagctg
ctgcgctggcgcgtcgcgctgagccccgatgccgaggcctaccgtgaacacgaggccgaa
cgcggctgggtgagctggacctggcgcgacttcggcgaacgtgtcgaacgctgcgcggcg
gcgctggacctgctggcgccggcacccggcgcgcgcatcgcgatcctgctgcccaacggc
ctggacgcggtggcgctggaccaggcggcgctctcgcgcggctgcgtgccgctgccgatg
cacgcgctcgacaacccgctgtcgatcgcctacatcctcgtcgacagcggtgccgagctg
ctggtcgcgcagaccgaggcccagtggcaggcgatcgccggctgcggcgcgctgccggcg
acgctgcgccaggtggtgatccgcgaacgcgacgaagccgcggcgccgggcgccgccggc
gggcccgagctgctgtcgctggccgagtggctggcgcgcggccaggaccggccggccccg
ccgccgctgccggtcggcgaagaagacctggccgcgctggtctacacctcgggcacgacc
ggcaagcccaagggcgtgatgctcacgcaccgcaacgtgatggccaacgtgaaggcggtg
ctggcgcgcatcgcaccgcggccggacgacgtcttcctgtccttcctgccgctgtcgcac
accttcgagcgcaccgccggctactacctgccgatcgccgccggttcgacggtggctttc
gcgcgctcgacgcagcacctgccggaggacatgaagacggtgcggccgacggtgctgatc
tcggtgccgcgcatctacgagcgtgtgttcgtcaagctgcagacgatgctcgaaggctcg
gcgctgaaaaagcgcctgttcgatatggcgcaggccgtcggctggcggcgtttctgccgc
gagcagaagctgcccgtgcccggctcggtgccggcggcctgggacgcgctggtctggccg
ctgctggctagccgcgtcagcgcgccgctgcaggcgcagttcggcggccggctgcggctg
gcggtgagcggcggcgcggcgctgtcggcgccgatcgcgcgctgcttcctcggcctgggc
ctgccgatcgtgcagggctacggcatgaccgagagcacgccggtcatcagctgcaacacg
cccgaggacaacgacccggcgaccgtcggccggccgctggacggcgtggaagtgcgcatc
ggcgacaaccgcgagctgctggtgcgcggcgccaacgtcatgcgcggctactggaaccgc
cccgaggacacggcgcgggcactcgaaggcggctggctgcacaccggcgaccaggccagc
ctggacggcgggcgcatccgcatcgtcggccgcgtcaaggagatcatcgtcaccgccacc
ggcgagaagatcgcgccgaccgacctggagatggcgatcgtcgccgacccgctgttcgag
tcggcctgggccttcggcgacaaccggccgttcatcgcctgcgtcgtcgtgctggccgcc
gggccctgggagcggctggcacgttcgctggggctggacccggccgatccggcgtcgctg
caggcgccggcggcacgcgaggcggcgctggcgcgcatccgcgccgcgacggcggccttc
ccgcattacgcccagccgcgcgcggtctgcctgacgaccgagccctggaccatcgagagc
acgatgatcacgccgacgctcaagttgaagcgcaacaacctccagtcgcgctacggcgag
caggtcgaggcgctgtaccggcgctga
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