Rubrivivax gelatinosus: RGE_32020
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Entry
RGE_32020 CDS
T01803
Symbol
kdsB
Name
(GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) KdsB
KO
K00979
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:
2.7.7.38
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge00541
Biosynthesis of various nucleotide sugars
rge01100
Metabolic pathways
rge01250
Biosynthesis of nucleotide sugars
Module
rge_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
RGE_32020 (kdsB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
rge01005
]
RGE_32020 (kdsB)
Enzymes [BR:
rge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.38 3-deoxy-manno-octulosonate cytidylyltransferase
RGE_32020 (kdsB)
Lipopolysaccharide biosynthesis proteins [BR:
rge01005
]
Lipid A
RGE_32020 (kdsB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CTP_transf_3
NTP_transf_3
DUF2064
Acetyltransf_6
Motif
Other DBs
NCBI-ProteinID:
BAL96541
UniProt:
I0HU54
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Position
3412287..3413030
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AA seq
247 aa
AA seq
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MSFTVLIPARLASTRLPRKPLADIGGLPMIVRVARRVADAGAERIVVACDDADIAAACAA
HGVEAVLTRADHPSGSDRLAEACTRLGLDGSARIVNVQGDEPLIDPALVRRCAELLDERP
DCVMSTAAHAIASAEDFANRNVVKVVLDAAGRALYFSRSAIPCWRDGAPGTLPDPAPLRH
VGLYGYRAGFLRRFPTLEPAPLERLESLEQLRVLWHGERIAVHVAEHAPGTGVDTPEDLE
RVRALFA
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
gtgagcttcacggtcctgatcccggcgcgcctggcctccacgcgcctgccgcgcaagccg
ctggccgacatcggcggcctgccgatgatcgtgcgcgtcgcgcgccgcgtcgccgatgcc
ggcgccgagcgcatcgtcgtcgcctgcgacgacgccgacatcgccgccgcctgcgccgcg
cacggcgtcgaggcggtgctgacacgcgccgaccacccgagcggcagcgaccgcctggcc
gaggcctgcacgcggctgggcctggacggctcggcgcgcatcgtcaacgtgcagggcgac
gagccgctgatcgacccggcgctggtgcgccgctgcgccgagctgctcgacgagcggccc
gactgcgtgatgagcaccgcggcgcacgccatcgcctcggccgaggacttcgccaaccgt
aacgtcgtcaaggtcgtgctcgacgccgccggacgcgcgctgtacttcagccgctcggcc
atcccctgctggcgcgacggtgcgccgggcacgctgcccgacccggcaccgctgcgccac
gtcggcctctacggctaccgcgccggctttctgcgccgcttcccgacgctggagccggca
ccgctggaacgcctggagtcgctggagcagctgcgcgtgctgtggcacggcgaacgcatc
gcggtgcacgtcgccgaacatgctccaggcaccggcgtcgacacgcccgaagacctggaa
cgcgtgcgcgcgctcttcgcctga
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