Rubrivivax gelatinosus: RGE_33000
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Entry
RGE_33000 CDS
T01803
Symbol
dnaX
Name
(GenBank) DNA polymerase III gamma/tau subunit DnaX
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03030
DNA replication
rge03430
Mismatch repair
rge03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGE_33000 (dnaX)
03430 Mismatch repair
RGE_33000 (dnaX)
03440 Homologous recombination
RGE_33000 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rge03032
]
RGE_33000 (dnaX)
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_33000 (dnaX)
Enzymes [BR:
rge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RGE_33000 (dnaX)
DNA replication proteins [BR:
rge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RGE_33000 (dnaX)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RGE_33000 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA
RuvB_N
AAA_22
ResIII
AAA_14
AAA_18
DNA_pol3_tau_5
AAA_16
DUF3646
Rad17
nSTAND3
AAA_5
Adeno_E1B_55K_N
TsaE
Herpes_Helicase
AAA_19
AAA_28
RNA_pol_Rpb1_3
AAA_2
AAA_24
Motif
Other DBs
NCBI-ProteinID:
BAL96639
UniProt:
I0HUF2
LinkDB
All DBs
Position
complement(3519669..3521654)
Genome browser
AA seq
661 aa
AA seq
DB search
MSYVVLARKYRPRSFDQMVGQEHVVRALSNALEQQRLHHAYLFTGTRGIGKTTVSRILAK
SLNCTGPDGTGGITAHPCGVCSACTEIDGDRYIDYIELDAASNRSIDEIRDLIERAAYKP
GIGRFKVFMIDEAHQLTKDAFNALLKTLEEPPEYLKFVLATTDPEKMLPTVLSRCLQFNL
RPMAPQTVHEHLQEVLAAEHVPHDEASLRLLSRAARGSMRDALSLTDQAIAYGGGRVDEA
VVRGMLGSVDRGHARRLVEALAARDGAAVLATVDALRAMGLSASATLEELASLLQQMAVE
QAVPGALDAQDPDTEDARALASVLPPDETQLLYSIALHGRAELALMSDEYGALTMVLLRL
LAFPPAGAAPVPPREAPRSAPLRAPSPPAMTMPVAKAAAPVVPASPPPRPVPVAPVVAPQ
PAAPASAPVAERRREPPAPAPQAAPERIETRSAPPDDEPPWGRDDEPPPEGEYRHAVPAP
SRRPAAVPDPEPERFEPAPVDAVPDEPPPVERRPRPVRRDEPPAPPPRTPLGDRWYALCQ
AMAERGAVSALLRELAWQGGLVEVDEAAAPQRWRLQVERESLRTNALREKLAAAMAAELG
APVDLVLEPGSPEDTPAKRDAWERTRRQQEAEHTIRHDPVVLELMRQFPTARLVPNSIKP
V
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
gtgagctacgtcgtcctcgcgcgcaaataccgtccccgcagcttcgaccagatggtcggc
caggagcacgtcgtccgtgcgctgagcaacgcgctggagcagcagcggctgcaccacgcc
tacctcttcaccggcacgcgcgggattggcaagaccaccgtctcgcgcatcctggccaag
agcctgaactgcaccgggcccgatggcaccggcggcatcaccgcgcatccctgcggcgtc
tgcagcgcctgtaccgagatcgacggcgaccgctacatcgactacatcgagctcgacgcg
gccagcaaccgcagcatcgacgagatccgcgacctgatcgagcgtgccgcctacaagccc
ggcatcggccgcttcaaggtcttcatgatcgacgaggcgcatcagctgaccaaggacgcc
ttcaacgcgctgctgaagacgctggaggagccgcccgagtacctgaagttcgtgctcgcg
acgaccgacccggagaagatgctgccgacggtgctgtcgcgctgcctgcagttcaacctg
cggccgatggcgccgcagacggtgcacgagcacctgcaggaggtgctggccgccgagcac
gtgccgcacgacgaggcctcgctgcgcctgctctcgcgtgccgcgcgcggatcgatgcgc
gacgcgctgtcgctgaccgaccaggccatcgcctacggtggcggccgggtcgacgaggcc
gtcgtgcgcggcatgctgggcagcgtcgaccgcggccatgcacgccggctcgtcgaggcg
ctggccgcacgcgacggcgccgcggtgctggccaccgtcgacgcgctgcgcgcgatgggc
ctgtcggcctcggcgacgctggaggaactggcctcgctgctgcagcagatggccgtcgag
caggccgttcccggcgcgctggatgcgcaggaccccgacaccgaggacgcgcgtgcgctg
gccagcgtgctgccacccgacgagacgcagctgctctacagcatcgcgctgcacggccgc
gccgagctggcgctgatgagcgacgagtacggcgcgctgacgatggtgctgctgcgcctg
ctggccttcccgccggccggtgccgcgccggtgccgccgcgcgaagcgccgcgttcggcg
ccgctgcgcgcgccatcgccgccggcgatgacgatgccggtggccaaggctgctgcgccg
gtcgtcccggcctcgccgccgccgcggcctgtgccggtggcgccggtggtcgcgccgcag
cctgcggcacccgcgtccgcgcctgttgccgaacgccgccgcgaacctcctgcgccggcg
ccgcaggcggctcctgaacgcatcgaaacgcgctcggcaccgcctgacgacgagccgccc
tggggccgtgacgacgagccgccgcccgaaggcgagtaccgacacgccgttccggcgccg
tcgcgcaggccggctgcagtgccggatccggagcccgagcgcttcgagcccgctccggtc
gacgccgtgcccgacgaaccgcctcccgtcgaacgccgcccgcgcccggtgcgccgcgac
gagccgcccgcgccgccgccgcgcacgccgctgggcgaccgctggtatgcgctgtgccag
gcgatggccgagcgcggtgccgtctcggcgctgctgcgtgaactcgcctggcagggcggg
ctggtcgaggtcgacgaggccgccgcgccgcagcgctggcggctgcaggtcgaacgcgag
tcgctgcgcaccaatgcgctgcgcgagaagctggcggccgcgatggccgcggagctcggc
gcgccggtcgatctggtgctcgaacccggttcgcccgaggacacgccggccaagcgtgac
gcctgggagcgcacgcgccgccagcaggaggccgagcacacgatccgccacgacccggtg
gtgctggagctgatgcgtcagttccccacggcacgcctggtgccgaactcgatcaagccg
gtctga
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