Rubrivivax gelatinosus: RGE_33870
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Entry
RGE_33870 CDS
T01803
Symbol
polA
Name
(GenBank) DNA polymerase I PolA
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03030
DNA replication
rge03410
Base excision repair
rge03420
Nucleotide excision repair
rge03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGE_33870 (polA)
03410 Base excision repair
RGE_33870 (polA)
03420 Nucleotide excision repair
RGE_33870 (polA)
03440 Homologous recombination
RGE_33870 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rge03032
]
RGE_33870 (polA)
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_33870 (polA)
Enzymes [BR:
rge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RGE_33870 (polA)
DNA replication proteins [BR:
rge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RGE_33870 (polA)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RGE_33870 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGE_33870 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
GP68
Motif
Other DBs
NCBI-ProteinID:
BAL96726
UniProt:
I0HUN9
LinkDB
All DBs
Position
complement(3614542..3617292)
Genome browser
AA seq
916 aa
AA seq
DB search
MDDSRPTLLLVDGSSYLYRAYHALPDLRSPDGFPTGALHGMVAMMKRLREQVPAEHAVCV
FDAKGPTFRDDWYADYKAQRAPMPEPLVQQIAPIHEVVRLLGWPVLEVPGIEADDAIGTL
ACVAKRAGHRVVVSTGDKDLAQLVDEHVTLINTMSNETLDPAGVLAKFGVPPEKIVDYLT
LVGDAVDNIPGVEKVGPKTAVKWIAEHGSLDGVMAAAATIKGVAGENLRRALDWLPQGRR
LVTVACDCDLAAHVAGWPALDALALRAADEAGLLDFYRRYGFKTWGRELEGRLGGDAPAA
AASTGAAPAAPAVEIAREYETIASWERLDAWLERLQAAELVAIDTETDSLEPMKARIVGI
SFAVEPGRGAYVPLAHAGPDAPEQLPLDAVLARLKPWLEDASRAKLGQNLKYDRHVFANT
GIALAGVRHDTMLESYVLEAHKPHSLESLAERHLGRKGLSYEDLCGKGVNQIPFAQVDVA
RATEYSAEDSEMALHVHQVLWPEIEADAGLRHVYEAIEMPVAEVLARIERHGVLVDPQEL
ARQSRDLAERMVALEQEVYAIAEQPFNLGSPKQIGEILFGNLGLPVKKRTASGAPSTDED
VLTELAADYPLPARILEHRSLAKLKGTYTDKLPLMVNPATGRVHTNYAQAVAVTGRLASN
EPNLQNIPIRTPEGRRVRRAFVAPPGHVILSADYSQIELRIMAHISEDEGLLRAFSEGVD
VHRATAGEVFGVPLEEVTSEQRRYAKVINFGLIYGMGAFGLASNLGIEQKAAKDYIDRYF
ARFAGVKRYMDETRVRAKEKGFVETVFGRRLWLPEINSGNGPRRSGAERQAINAPMQGTA
ADLIKLAMIAVQQALDAERRATRMVMQVHDELVLEVPEAELDWAKDAIPRLMAGVAALKV
PLVAEVGIGANWDEAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggacgattcccgccccacgctgctgctggtcgacggctccagctacctctaccgcgcc
taccacgcgctgcccgacctgcgttcgcccgacggtttccccaccggcgccttgcacggc
atggtcgcgatgatgaaacgcctgcgcgagcaggtgcccgccgagcacgccgtctgcgtc
ttcgacgccaagggcccgaccttccgcgacgactggtacgccgactacaaggcgcagcgc
gcgccgatgcccgaaccgctggtgcagcagatcgcgccgatccacgaggtcgtgcgcctg
ctcggctggccggtgctggaagtgcccggcatcgaggccgacgacgcgatcggcacgctg
gcctgtgtcgccaagcgagccggccaccgcgtcgtcgtctccaccggcgacaaggacctg
gcccagctcgtcgacgagcacgtcacgctgatcaacacgatgagcaacgagacgctggac
ccggccggcgtgctggccaagttcggcgtgccgccggagaagatcgtcgactacctgacg
ctggtcggcgacgccgtcgacaacatcccgggcgtcgagaaggtcggcccgaagacggcc
gtgaagtggatcgccgaacacggctcgctcgacggcgtgatggccgccgcggcgacgatc
aagggcgtggccggcgagaacctgcgccgtgcgctggactggctgccgcagggccggcgc
ctggtcaccgtggcctgcgactgcgatctggcggcccacgtcgccggctggccggcgctg
gacgcgctggcgctgcgcgccgccgacgaggccgggctgctggacttctaccgccgttac
ggcttcaaaacctggggccgcgagctggagggccggctgggcggcgacgcgcccgccgcg
gcggcctcgaccggcgccgcgccggccgccccggccgtcgagatcgcccgcgagtacgag
acgatcgccagctgggagcgcctggacgcctggctggagcgcctgcaggccgccgagctg
gtggcgatcgacaccgagaccgactcgctggagccgatgaaggcgcgcatcgtcggcatc
agcttcgccgtcgaacccggccgcggcgcctacgtgccactggcgcacgccggccccgac
gcgcccgagcagctgccgctggacgccgtgctggcgcgcctgaagccctggctggaggac
gcctcgcgcgccaagctcggccagaacctgaagtacgaccgccacgtcttcgccaacacc
ggcatcgcgctcgccggcgtgcgccacgacacgatgctcgagagctacgtgctcgaggcg
cacaagccgcacagcctcgaaagcctggccgagcgccacctcggccgcaagggcctgtcc
tacgaggacttgtgcggcaagggcgtgaaccagatcccgttcgcccaggtcgacgtcgcg
cgcgccaccgagtactcggccgaggacagcgagatggcgctgcacgtgcaccaggtgctg
tggcccgagatcgaggccgacgccgggctgcgccacgtctacgaggccatcgagatgccg
gtggccgaggtgctggcgcgcatcgagcgccacggcgtgctcgtcgacccgcaggagctg
gcgcgccagagccgcgatctggccgagcgcatggtcgcgctggagcaggaggtctatgcg
atcgccgagcagcccttcaacctgggcagccccaagcagatcggcgagatcctgttcggc
aacctgggcctgccggtgaagaaacgcaccgccagcggcgcgccgagcaccgacgaggac
gtgctgaccgaactcgccgccgactacccgctgccggcgcgcatcctcgagcaccgcagc
ctggccaagctgaagggcacctacaccgacaagctgccgctgatggtcaacccggccacc
ggccgcgtgcacaccaactacgcgcaggcggtggccgtgaccggccggctggcgagcaac
gagcccaacctgcagaacatcccgatccgcacgcccgagggccggcgcgtgcgccgcgcc
ttcgtcgcgccgccggggcacgtgatcctgagcgccgactactcgcagatcgagctgcgc
atcatggcccacatcagcgaggacgaaggcctgctgcgcgccttctccgaaggcgtcgac
gtgcaccgcgcgaccgccggcgaggtcttcggcgtgccgctggaggaggtgacgagcgag
cagcgccgctacgccaaggtcatcaacttcggcctcatctacggcatgggcgccttcggc
ctggcgagcaacctcggcatcgagcagaaggcggccaaggactacatcgaccgctacttc
gcgcgtttcgccggcgtcaagcgctacatggacgagacccgggtgcgggccaaggagaag
ggtttcgtcgagacggtcttcggccgccggctctggctgccggagatcaactccggcaac
ggcccgcggcgcagcggcgccgagcgccaggcgatcaacgcgccgatgcagggcacggcc
gccgacctgatcaagctggcgatgatcgccgtgcagcaggcgctggacgccgagcgccgc
gcgacgcgcatggtcatgcaggtgcacgacgaactggtgctcgaggtgcccgaggccgag
ctcgactgggcgaaggacgcgatcccgcgcctgatggccggcgtcgcggcgctgaaggtg
ccgctggtcgccgaagtcggcatcggcgccaactgggacgaagcccactga
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