Rubrivivax gelatinosus: RGE_33910
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Entry
RGE_33910 CDS
T01803
Symbol
uvrD
Name
(GenBank) DNA helicase II UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03420
Nucleotide excision repair
rge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGE_33910 (uvrD)
03430 Mismatch repair
RGE_33910 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_33910 (uvrD)
Enzymes [BR:
rge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGE_33910 (uvrD)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGE_33910 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RGE_33910 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
Succ_CoA_lig
Motif
Other DBs
NCBI-ProteinID:
BAL96730
UniProt:
I0HUP3
LinkDB
All DBs
Position
complement(3619570..3621924)
Genome browser
AA seq
784 aa
AA seq
DB search
MHLQDAQLLRNLNPEQLAAVTLPAEPALILAGAGSGKTRVLTTRIAWLLATNQVSPGGVL
AVTFTNKAAKEMLTRLGTMLPFAVRGMWIGTFHGLCNRLLRAHWKAAGLPQSFQILDSAD
QLSAVKRVVKAMNLDEERFVPKQVAWFIAGQKEEGRRPAAVEAFDEHTRKLVQVYEAYEE
QCRREGVVDFAELMLRSYELLRDDDALREHYRRRFGHVLVDEFQDTNRLQYAWLKMFAPP
GAQGQGVFAVGDDDQSIYAFRGARVGNMADFEREYRVKSVIKLEQNYRSFGNILDAANAL
IAHNSQRLGKNLRTDAGPGEPIRVQEAPSDYAEAQWLLEEARELHRGGLARSEIAVLYRS
NAQSRVIESALFNAGIPYRVYGGLRFFERAEVKHALAYLRLLENLDDDTSFLRVVNFPAR
GIGARSIEQLQDAARASGRSLAQSVGAVPGKAGINLQGFVHKLDAMRSATQGLTLREIIE
HVVHESGLLDFYRTEKEGQDRIENLQELVNAAESFVTQEGFGKDAVALPLDEHGPGTLAG
GGEAPLPAPDAETGEIVSPLAAFLTHASLEAGDNQAQAGTDAVQLMTVHSAKGLEFDAVF
ITGIEEGLFPHEQSLSDADGVEEERRLMYVAITRARKRLYLSFSQTRMLHGQTRYNVKSR
FFDELPEGALKWLTPRQQGFGSGYAREYRQAWDRGQGLSGIVGAGRVERAEPWQQPVPFT
PKAPPAPAGQAPLRTGQAVFHTKFGEGVVVTLEGSGEDARAQVRFGRHGVKWLLLAMAKL
TPIE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgcatctccaagacgcgcagctgctgcgcaacctgaatcccgaacagctcgccgccgtc
acgctgccggccgaaccggcgctgatccttgccggtgccggctccggcaagacgcgcgtg
ctgaccacgcgcatcgcctggctgctggccaccaaccaggtctcgccgggcggcgtgctc
gccgtcaccttcaccaacaaggccgccaaggagatgctgacgcggctgggcacgatgctg
ccgtttgccgtgcgcggcatgtggatcggcaccttccacggcctgtgcaaccgcctgctg
cgcgcgcactggaaggccgcagggctgccgcagagcttccagatcctcgacagcgccgac
cagctctcggccgtcaagcgtgtcgtcaaggcgatgaacctcgacgaggagcgcttcgtg
cccaagcaggtggcgtggttcatcgccgggcagaaggaagagggccgccggccggccgcc
gtcgaggccttcgacgagcacacgcgcaagctcgtgcaggtctacgaggcctacgaggag
cagtgccggcgtgaaggcgtggtcgatttcgccgagctgatgctgcgcagctacgagctg
ctgcgcgacgacgacgcgctgcgcgagcactaccgccgccgcttcggccatgtgctcgtc
gacgagttccaggacaccaaccggctgcagtacgcctggctgaagatgttcgcgccgccg
ggcgcccagggccagggcgtgttcgccgtcggcgacgacgaccagagcatctacgccttc
cgcggcgcgcgcgtcggcaacatggccgacttcgagcgcgagtaccgcgtcaagagcgtc
atcaagctcgagcagaactaccgctcgttcggcaacatcctcgacgccgccaacgcgctg
atcgcgcacaactcgcagcgcctgggcaagaacctgcgcaccgacgccggccccggcgag
ccgatccgcgtgcaggaggcgcccagcgactacgccgaggcccagtggctgctggaggaa
gcgcgcgagctgcaccgcggcggcctggcgcgcagcgagatcgccgtgctctaccgcagc
aacgcgcagagccgggtcatcgagagcgcgctgttcaacgccggcattccgtaccgcgtc
tacggcggcctgcgcttcttcgagcgcgccgaggtcaagcacgcgctggcctatctgcgg
ctgctggagaacctcgacgacgacaccagcttcctgcgcgtcgtgaacttcccggcgcgc
ggcatcggcgcgcgttcgatcgagcagctgcaggacgcggcgcgcgccagcggccgcagc
ctggcgcagagcgtcggcgcggtgccgggcaaggccggcatcaacctgcagggcttcgtg
cacaagctcgacgcgatgcgcagcgccacccaggggctgacgctgcgcgagatcatcgag
cacgtcgtgcacgagagcgggctgctggacttctaccgcaccgagaaggaaggccaggac
cgcatcgagaacctgcaggaactggtcaacgccgccgagagcttcgtgacccaggaaggt
ttcggcaaggacgcggtggcgctgccgctggacgagcacggccccggcacgctggccggc
ggcggcgaggcgccgctgcccgcgcccgacgccgagaccggcgagatcgtctcgccgctg
gcggccttcctgacgcacgcctcgctggaggccggcgacaaccaggcccaggccggcacc
gacgccgtgcagctgatgacggtgcactcggccaaggggctggagttcgacgccgtgttc
atcaccggcatcgaggaaggcctgttcccgcacgagcagtcgctgtccgacgccgacggc
gtcgaggaggagcggcggctgatgtacgtcgcgatcacgcgcgccaggaagcgcctgtac
ctgagcttcagccagacgcgcatgctgcacggccagacgcgctacaacgtcaagagccgc
ttcttcgacgagctgcccgaaggcgcgctgaagtggctgacgccgcgccagcagggcttc
ggctcgggctacgcgcgcgagtaccgccaggcctgggaccgcggccaggggctgtcgggc
atcgtcggcgccgggcgcgtcgagcgcgccgagccctggcagcagccggtgccgttcacg
cccaaggcgccgcccgcgccggccggccaggcgccgctgcgcaccggccaggcggtgttc
cacaccaagttcggcgagggcgtggtcgtcacgctcgaaggcagcggcgaggacgcccgc
gcccaggtgcgcttcggccgccacggcgtcaagtggctgctgctggcgatggccaagctg
acgccgatcgagtga
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