Rubrivivax gelatinosus: RGE_38960
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Entry
RGE_38960 CDS
T01803
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase GlyA
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge00260
Glycine, serine and threonine metabolism
rge00460
Cyanoamino acid metabolism
rge00630
Glyoxylate and dicarboxylate metabolism
rge00670
One carbon pool by folate
rge00680
Methane metabolism
rge01100
Metabolic pathways
rge01110
Biosynthesis of secondary metabolites
rge01120
Microbial metabolism in diverse environments
rge01200
Carbon metabolism
rge01230
Biosynthesis of amino acids
rge01240
Biosynthesis of cofactors
rge04981
Folate transport and metabolism
Module
rge_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
RGE_38960 (glyA)
09102 Energy metabolism
00680 Methane metabolism
RGE_38960 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
RGE_38960 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
RGE_38960 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
RGE_38960 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
RGE_38960 (glyA)
Enzymes [BR:
rge01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
RGE_38960 (glyA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Cys_Met_Meta_PP
Aminotran_5
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
BAL97232
UniProt:
I0HW45
LinkDB
All DBs
Position
4182781..4184031
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AA seq
416 aa
AA seq
DB search
MFDRSISTLANVDPEIWATIQDENRRQEEHIELIASENYTSPAVMAAQGSQLTNKYAEGY
PGKRYYGGCEYVDVVEQLAIDRVKQLFGANFANVQPNSGSQANQAVFFGLLEPGDTIMGM
SLSEGGHLTHGMPLNMSGKWFKVVSYGLDANEAIDYDAMERLAHEHKPKLIIAGASAYSL
RIDFERFAKVAKAIGAYFMVDMAHYAGLVAAGVYPNPVPHADVVTSTTHKSLRGPRGGII
LMNDEAIAKKINSAIFPGIQGGPLMHVIAGKAVAFKEALAPEFKAYQQQVAANAKVLAET
LISRGLRIVSGGTESHVMLVDLRPKGLTGKEAEAVLGKAHMTCNKNGIPNDPQKPMVTSG
IRLGTPAMTTRGFKEDEARRTAHLIADVLDNPHDEANIAAVREKVAALTRDFPVYR
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgaccgttccatttccaccctcgccaacgtcgaccctgaaatctgggcgaccatc
caggacgagaaccgccgccaggaagagcacatcgagctcatcgcgtcggagaactacacc
agccccgcggtgatggccgcgcaaggctcgcagctcaccaacaagtacgccgagggctac
cccggcaagcgctactacggcggctgcgagtacgtcgacgtcgtcgaacagctggcgatc
gaccgcgtcaagcagctcttcggcgccaacttcgccaacgtgcagcccaactcgggctcg
caggccaaccaggccgtgttcttcggcctgctcgagccgggcgacacgatcatgggcatg
agcctgtccgaaggcggccacctgacgcacggcatgccgctgaacatgagcggcaagtgg
ttcaaggtcgtcagctacggcctggacgccaacgaagccatcgactacgacgcgatggaa
cgcctggcgcacgagcacaagcccaagctgatcatcgccggcgcctcggcctacagcctg
cgcatcgacttcgaacgtttcgccaaggtcgccaaggccatcggcgcctacttcatggtc
gacatggcgcactacgccggcctcgtcgccgcaggcgtctacccgaacccggtgccgcat
gccgacgtcgtcacgtccaccacgcacaagagcctgcgtggcccgcgcggcggcatcatc
ctgatgaacgacgaggcgatcgccaagaagatcaacagcgcgatcttccccggcatccag
ggcggcccgctgatgcacgtcatcgccggcaaggccgtcgccttcaaggaagcgctggcg
cccgagttcaaggcctaccagcagcaggtggcggccaacgccaaggtgctggccgagacg
ctgatctcgcgcggcctgcgcatcgtcagcggcggcaccgagagccatgtgatgctcgtc
gacctgcgccccaagggcctgaccggcaaggaagcggaagccgtgctgggcaaggcccac
atgacctgcaacaagaacggcatcccgaacgacccgcagaagccgatggtcaccagcggc
atccgcctgggcacgccggcgatgacgacgcgcggcttcaaggaagacgaggcgcgccgc
accgcgcacctgatcgccgacgtgctcgacaacccgcacgacgaggcgaacatcgccgcg
gtgcgcgagaaggtcgcggcgctgacgcgcgacttcccggtctaccgctga
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