Rubrivivax gelatinosus: RGE_40920
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Entry
RGE_40920 CDS
T01803
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE_40920 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rge03019
]
RGE_40920 (rne)
03009 Ribosome biogenesis [BR:
rge03009
]
RGE_40920 (rne)
Enzymes [BR:
rge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RGE_40920 (rne)
Messenger RNA biogenesis [BR:
rge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGE_40920 (rne)
Ribosome biogenesis [BR:
rge03009
]
Prokaryotic type
rRNA processing factors
RGE_40920 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BAL97428
UniProt:
I0HWP1
LinkDB
All DBs
Position
4397543..4400446
Genome browser
AA seq
967 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDFETELEGREQRKGNIYKAVITRVEPSLEACFVDY
GEDRHGFLPFKEISRNYFKDGVDLKNARIQDVVKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPKGGGVSRRIEGEDREELKENLEQLQYPKGMSLIARTAGIGRSAAELQ
WDLNYMLKLWDAIDGASKAGKGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDIYEQAQ
QFMNHVMPESASRVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSV
DVNSARSTRGSDIEETAFRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVEQR
LRDALRTDRARVQFSSISKFGLLELSRQRLRPALSEGNHITCPRCNGTGHIRDTESSALQ
ILRMVQEEAMKENTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRVTVILVPNKHLETPN
YKLERLRHDDPRLENLQASYTMVEEPDEEVGITRRRDANDKGRSKQEPVIKGVLPDQPAP
PAPAPAPVKAAAPAPQPAAPAPAPAAPAAAPANGGFFGWFKRMFTMPEPTPAAAPAAPAP
AAETAPATPDKREGGRRGGRGERGERGERAERGERGERNRNGRTEGRQEAREGREGRGEN
RRDGRRDAAEAGSETREPRAERGERTERSERAERGERGNRGPRAERAPRAEESTAAATLA
PAAAEALAPVDGAPVAENGETRESGRRRRRRGGRGNGEGRVEEGTLVDGSTVPAEDAAPA
ATDAAPTVDEASAPEGVFPEAHEREGEPEGEREGGRRRGRGRDRFRRERREGEAVATEGV
TEGATETVVGEDAAVTPPAPAEAVAELPETPVAEAVPAPQPPAAPRIEPYALPTEALSAL
AADAGLQWVQSDADKVRAAQEAIAAEPKPVHVPREPKPVVVADEGPLVLVETRKDLSQLK
LPFELGA
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaatgccacgcagccggaagagcggcgcctggcgatcgtcgac
gggcagaaactgctcgacttcgagaccgaactcgaaggccgcgaacagcgcaagggcaac
atctacaaggcggtgatcacccgcgtcgaaccgtcgctcgaagcctgcttcgtcgactac
ggcgaggatcgccacggcttcctgccgttcaaggaaatctcgcgcaattacttcaaggac
ggcgtcgacctcaagaacgcgcgcatccaggacgtcgtcaaggaaggccaggaactgctg
gtccaggtcgagaaggaagaacgcggcaacaagggcgcggcgctgacgaccttcgtcagc
ctggccggccgttacctcgtgctgatgcccaacaacccgaagggcggcggcgtcagccgg
cgcatcgagggcgaggaccgcgaggagctcaaagagaacctcgagcagctgcagtatccc
aagggcatgagcctgatcgcgcgcaccgccggcatcggccgctcggccgccgagctgcag
tgggacctgaactacatgctcaagctctgggacgccatcgacggcgcctccaaggccggc
aagggcgccttcctgatctaccaggaaagctcgctcgtcatccgcgcgatccgcgactac
ttcaccgcggacatcggcgagatcctgatcgacaccgacgacatctacgagcaggcgcag
cagttcatgaaccacgtgatgccggagtcggcatcgcgtgtgaagcgctaccgtgacgat
gcgccgctgttcagccgcttccagatcgagcaccagatcgagaccgcgttcagccgcacg
gtgaacctgccgtcgggcggcgcgatcgtcatcgaccacaccgaggccctggtctcggtg
gacgtgaactcggcgcgctcgacgcgcggcagcgacatcgaggaaaccgcgttccgcacc
aacctcgaggccgccgacgagatcgcgcgccagatgcggctgcgcgacctgggcgggctg
atcgtcgtcgacttcatcgacatggaagagtcgaagaaccgccgcgaggtcgaacagcgc
ctgcgcgacgcgctgcgcaccgaccgcgcccgcgtgcagttctcgtcgatcagcaagttc
ggcctgctcgaactgagccgccagcgcctgcgcccggcgctgtccgaaggcaaccacatc
acctgcccgcgctgcaacggcaccggccacatccgcgacaccgagagctcggcgctgcag
atcctgcgcatggtccaggaagaggcgatgaaggagaacaccgccgccgtgcacgtgcag
gtgccggtggaagtgacctccttcctgctcaacgagaagcgcaccgagatcaccaagatc
gagctcaagcagcgcgtcaccgtcatcctcgtgccgaacaagcacctggagacgccgaac
tacaagctcgagcgcctgcgccacgacgacccgcgcctggagaacctgcaggccagctac
acgatggtcgaggagccggacgaggaagtcggcatcacgcgccgtcgcgacgccaacgac
aagggccgcagcaagcaggagccggtgatcaagggcgtgctgcccgaccagccggcaccg
ccggcaccggcgcccgcgccggtgaaggccgctgcgcccgcgccgcaaccggccgccccg
gcccccgcgccggcagcgccggccgcggccccggccaacggcggcttcttcggttggttc
aagcgcatgttcacgatgcccgagccgacgccggccgcggcaccggctgcgccggccccg
gccgccgaaacggccccggcgacgccggacaagcgtgaaggcggccgccgcggtggccgt
ggcgagcgcggcgaacgtggcgagcgcgctgaacggggcgaacgcggcgaacgcaaccgc
aacggccgcaccgaaggccgccaggaagcccgcgaagggcgtgaaggccgcggcgagaac
cgccgcgacggccgccgcgacgccgccgaagccggcagcgagacccgcgagccgcgtgcc
gaacgtggggaacgcaccgagcgcagcgagcgcgctgaacgcggcgagcgtggcaaccgc
ggtccgcgtgccgaacgcgctccgcgcgccgaggagagcaccgccgccgccacgctggca
ccggccgccgccgaggcgctggcgccggtcgacggcgctccggtcgccgagaacggcgag
acccgtgagagcggccgccgccgccgccgccgtggtggccgcggcaacggcgaaggccgg
gtcgaggaaggcacgctggtcgacggcagcaccgtgccggccgaggacgccgcgcccgcg
gccaccgacgccgcgccgacggtcgacgaagcctccgcgcccgaaggcgtgttccccgaa
gcccacgaacgtgaaggcgagcccgaaggtgaacgcgaaggcggccgccgccgcggccgt
ggccgtgaccgcttccgccgcgaacgccgcgaaggcgaggccgtcgcgaccgaaggcgtg
accgagggcgcgaccgaaaccgtggtcggcgaagacgccgcggtgacgccgccggccccg
gccgaagccgtcgccgagctgccggaaaccccggtcgccgaagccgtgcccgcgccgcag
ccgccggccgcgccgcgcatcgagccctacgcgctgccgaccgaggcactgagcgcgctg
gccgccgacgccgggctgcaatgggtgcagtccgacgccgacaaggtgcgtgccgcgcag
gaagcgatcgccgccgagccgaagccggtgcacgtgccgcgtgaaccgaagccggtcgtc
gtcgccgacgaaggcccgctggtgctcgtcgagacgcgcaaggacctgtcgcagctgaag
ctgccgttcgaactcggcgcctga
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