Rubrivivax gelatinosus: RGE_41210
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Entry
RGE_41210 CDS
T01803
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE_41210 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rge03019
]
RGE_41210 (rhlE)
Enzymes [BR:
rge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGE_41210 (rhlE)
Messenger RNA biogenesis [BR:
rge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGE_41210 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAL97457
UniProt:
I0HWS0
LinkDB
All DBs
Position
complement(4422895..4424352)
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AA seq
485 aa
AA seq
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MNVNTPLAASVDDAAAAATEPAAPAPAFDTLPLDPKLLRAVADAGYTSMTPIQAKAIPIV
LAGRDVMGAAQTGTGKTAAFTIPLLQKMLRHENTSMSPARHPVRALVLAPTRELADQVAA
NVKTYAKHTRLRSAVVFGGVDMKPQTLELKAGVEVLIATPGRLLDHIEAKNAVLNQVEYV
VLDEADRMLDIGFLPDLQRILSYLPKARQTLLFSATFSPEIKRLAGSYLQEPVTVEVARP
NATASTVEQRFYGVSDDDKRATVRQILRQRELSQAIVFVNSKLGAARLARSFERDGLKTQ
ALHGDKSQDERLKALAAFKAGEVDLLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRI
GRTGRAGASGLAVTLITRDDTRLVSDIEKLIKKKIEVEPFEIEDDRPRRPRRRFDEERDE
APRAEAAPRRAPPPPSDPIFDRPYEPSPSAIAAAPAPAASPAPSRGLTPSIRPKRKVAAL
LGGGR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcaatactccccttgccgcgtcggtggatgacgcggccgccgcggccaccgaa
cccgccgcgcctgctcccgctttcgacacgctgccgctcgatccgaagctgctgcgcgcc
gtggccgatgccggctacacctcgatgaccccgatccaggccaaggcgatcccgatcgtc
ctggccggccgcgacgtgatgggcgccgcccagaccgggaccggcaagaccgccgctttc
acgatcccgctgctgcagaagatgctgcggcacgagaacaccagcatgtccccggcgcgc
cacccggtgcgcgcgctggtgctggcgccgacacgcgagctggccgaccaggtggccgcc
aacgtcaagacctatgccaagcacacccggctgcgttcggccgtcgtcttcggcggcgtc
gacatgaagccgcagacgctggagctgaaggccggcgtcgaggtcctgatcgccacgccg
ggccggctgctcgaccacatcgaggccaagaacgcggtgctcaaccaggtcgagtacgtc
gtgctcgacgaagccgaccgcatgctcgacatcggcttcctgcccgatctgcagcgcatc
ctgtcctacctgcccaaggcgcgccagacgctgctgttctcggcgaccttctcgcccgag
atcaagcgcctggccggcagctacctgcaggagccggtgacggtcgaggtcgcgcggccc
aacgccaccgcgtccaccgtcgagcagcgcttctacggcgtctccgacgacgacaagcgc
gccacggtgcgccagatcctgcgccagcgcgagctgtcgcaggccatcgtcttcgtcaac
agcaagctaggcgcggcgcgcctggcgcgctcgttcgagcgcgacggcctgaagacccag
gccctgcacggcgacaagagccaggacgagcgcctgaaggcgctggccgcgttcaaggcc
ggcgaggtcgacctgctggtggccaccgacgtcgccgctcgcggcctggacatcgccgac
ctgccggcggtcttcaacttcgacgtgccgttcaacgccgaggactacgtgcaccgcatc
ggccgcaccggccgcgccggcgcctcgggcctggcggtgacgctgatcactcgcgacgac
acgcgcctggtctcggacatcgagaagctgatcaagaagaagatcgaggtcgagcccttc
gagatcgaggacgaccgcccgcgccggccgcgccgccgcttcgacgaggagcgcgacgag
gcgccgcgggccgaggccgcgccgcgccgcgcgccgccgccgccgtccgacccgatcttc
gaccggccgtacgagccgtcgccgtcggccatcgcggccgccccggcgccggcggccagc
ccggccccgtcgcgtgggctcacgcccagcatccggcccaagcgcaaggtcgccgcgctg
ctcggcggcgggcgctga
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